View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18339_low_21 (Length: 460)
Name: NF18339_low_21
Description: NF18339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18339_low_21 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 45 - 422
Target Start/End: Complemental strand, 31416538 - 31416161
Alignment:
| Q |
45 |
tgtcaacttataattaatctttttaaaactcaaaagaaacgtgtttgtctatctttcaaatcttttgttcattcggatggagccctcgtctaatacatcg |
144 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
31416538 |
tgtcaacctgtaattaatctttttaaaactcaaaagaaacgtatttgtctatctttcaaatcttttgttcattcggatgtggccctcgtctaatacatcg |
31416439 |
T |
|
| Q |
145 |
ttctgcgttggcttagcattcaatggtgtggttgatttgaaaggatcataatgatgttattttctctaataaagttatgaatattgagcaattgatggat |
244 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
31416438 |
ttctgcgttagcttagcattcaatggtgtggttgatttaaaaggatcataatgatgttattttctctaataaagttatgaatattgagcaattgatgaat |
31416339 |
T |
|
| Q |
245 |
cgaactaagtttcttcttaaaagtggttctgcgtgagtcatggaggaatccttatagttctatgagtgggttgttgaaccttttgtttatcttttaagat |
344 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31416338 |
cgaacgaagttttttcttaaaagtggttctgcgtgagtcatggaggaatccttatagttctatgagtgggttgttgaaccttttgtttatcttttaagat |
31416239 |
T |
|
| Q |
345 |
acctctttgtacggttacctagnnnnnnnncagcgctgttatacacaccgaataattagccaatcatgtgaattcttg |
422 |
Q |
| |
|
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31416238 |
agctctttgtacggttacctagttttttttcagcgctgttatacacaccgaataattagccaatcatgtgaattcttg |
31416161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University