View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18339_low_22 (Length: 454)
Name: NF18339_low_22
Description: NF18339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18339_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 2 - 434
Target Start/End: Original strand, 1396240 - 1396665
Alignment:
| Q |
2 |
ccctaattagttgaaatgagtttccagtctcagtttctagacaatatttttgttagccatccgaaagatgatgaggtgatttcgtgcactgtttgtttcg |
101 |
Q |
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| T |
1396240 |
ccctaattagttgagatgagtttacagtctcagtttctagacaatatttttgtgggccatccgaaagatgatgaggtgatttcgtgcaatgtttgtttcg |
1396339 |
T |
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| Q |
102 |
acaagaagatgcacgacccaagtggtgatggcaatatcagcttgctccttagacttgactttccattttctgggtataatgtggggacattttccatttt |
201 |
Q |
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| T |
1396340 |
acaagaagatgcacgacccaagtggtgatggcaatatcagcttgctcctta-----gactttccattttctgggtataatgtggggacattttccattat |
1396434 |
T |
|
| Q |
202 |
taggatttcccacttatattttgcagataatacactccttttgggcgagaaaaattggggtaatattagagctataaaggcaaatttgatcctctttgaa |
301 |
Q |
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| T |
1396435 |
taggatttcccacttatattttgcatataatacactccttttgggcgagaaaaattggggtaattttagagc--taaaggcaaattttatcctctttgaa |
1396532 |
T |
|
| Q |
302 |
atcatctctggtataaagcttaattttcatacgagtttgctggtaggcattaatatggaggagttatggttactagatgcatatgtggtgttgaattgta |
401 |
Q |
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| T |
1396533 |
atcatctctggtattaagcttaattttcataagagtttgttggtaggcattaatatggaggagttaaggttactagaagcatatgtggtgttgaattgta |
1396632 |
T |
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| Q |
402 |
aagttggtcagcttccatttacttataggggcg |
434 |
Q |
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| T |
1396633 |
aagttggtcaacttccgtttacttataggggcg |
1396665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 193 - 428
Target Start/End: Complemental strand, 17352784 - 17352549
Alignment:
| Q |
193 |
ttccatttttaggatttcccacttatattttgcagataatacactccttttgggcgagaaaaattggggtaatattagagctataaaggcaaatttgatc |
292 |
Q |
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| T |
17352784 |
ttccattttctggatttcccacctacaatttgtggatgatacactccttttggccgagaaaattggggttaatactagagctataaaggcgaatttgatt |
17352685 |
T |
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| Q |
293 |
ctctttgaaatcatctctggtataaagcttaattttcatacgagtttgctggtaggcattaatatggaggagttatggttactagatgcatatgtggtgt |
392 |
Q |
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| T |
17352684 |
atgtttcagatcatttattgtttgaaggtaaattttcacaagagtttatcgataggtgtgaatatggaggagtcatgattgttagaagcttatgtggtgt |
17352585 |
T |
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| Q |
393 |
tgaattgtaaagttggtcagcttccatttacttata |
428 |
Q |
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| T |
17352584 |
tgaattgtaaagttggtcagctaccgtttatttata |
17352549 |
T |
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