View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18339_low_24 (Length: 413)

Name: NF18339_low_24
Description: NF18339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18339_low_24
NF18339_low_24
[»] chr4 (4 HSPs)
chr4 (15-396)||(27724909-27725289)
chr4 (352-396)||(6987736-6987780)
chr4 (352-396)||(11264332-11264376)
chr4 (270-310)||(4071832-4071872)
[»] chr6 (6 HSPs)
chr6 (340-396)||(2455829-2455885)
chr6 (270-302)||(32980491-32980523)
chr6 (269-302)||(2514651-2514684)
chr6 (340-393)||(9833108-9833161)
chr6 (273-310)||(27595647-27595684)
chr6 (352-396)||(9667980-9668024)
[»] chr2 (4 HSPs)
chr2 (340-396)||(36852491-36852547)
chr2 (340-396)||(34652031-34652087)
chr2 (269-310)||(25609745-25609786)
chr2 (352-396)||(1939327-1939371)
[»] chr7 (2 HSPs)
chr7 (340-395)||(27626119-27626174)
chr7 (269-311)||(49060489-49060531)
[»] chr3 (2 HSPs)
chr3 (337-396)||(49465931-49465990)
chr3 (269-310)||(1395620-1395661)
[»] chr1 (3 HSPs)
chr1 (341-392)||(44031998-44032049)
chr1 (271-310)||(45234148-45234187)
chr1 (269-310)||(50319241-50319282)
[»] chr8 (3 HSPs)
chr8 (269-302)||(1470944-1470977)
chr8 (269-310)||(4558747-4558788)
chr8 (340-396)||(31875590-31875646)
[»] chr5 (1 HSPs)
chr5 (270-302)||(35960364-35960396)


Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 15 - 396
Target Start/End: Original strand, 27724909 - 27725289
Alignment:
Q  15 gaacctgtgggagagaatctgactccagaagcttttatcacatgtccagaccagnnnnnnnttacggctgttgaatttgcaagctttggtgatccttcgg 114  Q
    |||| |||||| ||||||||||||||||||||||||||||| ||||| ||||||       ||||||||||||| |||||||||||||||||||||||||    
T  27724909 gaacgtgtgggggagaatctgactccagaagcttttatcacgtgtccggaccagaaaaaaattacggctgttgagtttgcaagctttggtgatccttcgg 27725008  T
Q  115 gtttctgtggaagctttactatgggaaaatgtaatgcaccttcctccaagaagattgttgagcaggtagcgctctcgtttctttgctagcaaactaactt 214  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27725009 gtttctgtggaagctttattatgggaaaatgtaatgcaccttcctccaagaagattgttgagcaggtagagctctcgtttctttgctagcaaactaactt 27725108  T
Q  215 tgatcatgtttggattaacggcttgattaagcacttatagtactataagtgtttgctatttctataataaaacataaaataaagtcaagttatttttggt 314  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||    
T  27725109 tggtcatgtttggattaacggcttgattaagcacttatagtactataagtgtttgctatttctataataaaacataaaat-aagtcaagttattttcggt 27725207  T
Q  315 aaaagcgataagnnnnnnnnacaatctatcttgaagtgcttatggaaatcatttgaaaatagtttatggacatgtcataagt 396  Q
    ||||| ||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27725208 aaaagtgataagttttttttacaatctatcttgaagtgcttatggaaatcatttgaaaatagtttatggacatgtcataagt 27725289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 352 - 396
Target Start/End: Complemental strand, 6987780 - 6987736
Alignment:
Q  352 gcttatggaaatcatttgaaaatagtttatggacatgtcataagt 396  Q
    |||||||||||| | ||||||||||||||||||||||||||||||    
T  6987780 gcttatggaaataagttgaaaatagtttatggacatgtcataagt 6987736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 352 - 396
Target Start/End: Original strand, 11264332 - 11264376
Alignment:
Q  352 gcttatggaaatcatttgaaaatagtttatggacatgtcataagt 396  Q
    |||||||||||| | ||||||| ||||||||||||||||||||||    
T  11264332 gcttatggaaataagttgaaaacagtttatggacatgtcataagt 11264376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 310
Target Start/End: Original strand, 4071832 - 4071872
Alignment:
Q  270 ctatttctataataaaacataaaataaagtcaagttatttt 310  Q
    |||||||||||| |||| ||||||||||||||| |||||||    
T  4071832 ctatttctataacaaaagataaaataaagtcaaattatttt 4071872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 396
Target Start/End: Original strand, 2455829 - 2455885
Alignment:
Q  340 ctatcttgaagtgcttatggaaatcatttgaaaatagtttatggacatgtcataagt 396  Q
    |||||||| || |||||||||||| | ||||||||||||||||| ||||||||||||    
T  2455829 ctatcttggagagcttatggaaataagttgaaaatagtttatgggcatgtcataagt 2455885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 302
Target Start/End: Original strand, 32980491 - 32980523
Alignment:
Q  270 ctatttctataataaaacataaaataaagtcaa 302  Q
    |||||||||||||||||||||||||||||||||    
T  32980491 ctatttctataataaaacataaaataaagtcaa 32980523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 302
Target Start/End: Original strand, 2514651 - 2514684
Alignment:
Q  269 gctatttctataataaaacataaaataaagtcaa 302  Q
    |||||||||||||||||| |||||||||||||||    
T  2514651 gctatttctataataaaagataaaataaagtcaa 2514684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 393
Target Start/End: Complemental strand, 9833161 - 9833108
Alignment:
Q  340 ctatcttgaagtgcttatggaaatcatttgaaaatagtttatggacatgtcata 393  Q
    ||||| ||||| |||||||||||| | ||||||||| |||||||||||| ||||    
T  9833161 ctatcatgaagagcttatggaaataagttgaaaataatttatggacatgccata 9833108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 310
Target Start/End: Complemental strand, 27595684 - 27595647
Alignment:
Q  273 tttctataataaaacataaaataaagtcaagttatttt 310  Q
    |||||||||||||| ||||||||||||||| |||||||    
T  27595684 tttctataataaaagataaaataaagtcaaattatttt 27595647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 396
Target Start/End: Complemental strand, 9668024 - 9667980
Alignment:
Q  352 gcttatggaaatcatttgaaaatagtttatggacatgtcataagt 396  Q
    |||||||||||| | ||||||| || |||||||||||||||||||    
T  9668024 gcttatggaaataagttgaaaacagcttatggacatgtcataagt 9667980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 396
Target Start/End: Original strand, 36852491 - 36852547
Alignment:
Q  340 ctatcttgaagtgcttatggaaatcatttgaaaatagtttatggacatgtcataagt 396  Q
    |||||||| || |||||||||||| || |||||||||||||| ||||||||||||||    
T  36852491 ctatcttggagagcttatggaaataatctgaaaatagtttatagacatgtcataagt 36852547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 340 - 396
Target Start/End: Complemental strand, 34652087 - 34652031
Alignment:
Q  340 ctatcttgaagtgcttatggaaatcatttgaaaatagtttatggacatgtcataagt 396  Q
    |||||||| || |||||||||||| | ||||||| || |||||||||||||||||||    
T  34652087 ctatcttggagagcttatggaaataagttgaaaacagcttatggacatgtcataagt 34652031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 310
Target Start/End: Original strand, 25609745 - 25609786
Alignment:
Q  269 gctatttctataataaaacataaaataaagtcaagttatttt 310  Q
    ||||||||||||| |||| ||||||||||||||| |||||||    
T  25609745 gctatttctataagaaaagataaaataaagtcaatttatttt 25609786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 396
Target Start/End: Complemental strand, 1939371 - 1939327
Alignment:
Q  352 gcttatggaaatcatttgaaaatagtttatggacatgtcataagt 396  Q
    |||||||||||| | ||||||| || |||||||||||||||||||    
T  1939371 gcttatggaaataagttgaaaacagcttatggacatgtcataagt 1939327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 340 - 395
Target Start/End: Complemental strand, 27626174 - 27626119
Alignment:
Q  340 ctatcttgaagtgcttatggaaatcatttgaaaatagtttatggacatgtcataag 395  Q
    ||||| ||||| |||||||||||| | || |||| |||||||||||||||||||||    
T  27626174 ctatcatgaagagcttatggaaataagtttaaaacagtttatggacatgtcataag 27626119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 311
Target Start/End: Original strand, 49060489 - 49060531
Alignment:
Q  269 gctatttctataataaaacataaaataaagtcaagttattttt 311  Q
    ||||||||||||| |||| ||||||||||||||| ||||||||    
T  49060489 gctatttctataacaaaaaataaaataaagtcaaattattttt 49060531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 337 - 396
Target Start/End: Complemental strand, 49465990 - 49465931
Alignment:
Q  337 aatctatcttgaagtgcttatggaaatcatttgaaaatagtttatggacatgtcataagt 396  Q
    |||||||| | ||| | |||||||||| | |||||||||||| |||||||||||||||||    
T  49465990 aatctatcctaaagagtttatggaaataagttgaaaatagttcatggacatgtcataagt 49465931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 310
Target Start/End: Original strand, 1395620 - 1395661
Alignment:
Q  269 gctatttctataataaaacataaaataaagtcaagttatttt 310  Q
    ||||||||||||| |||| ||||||||||||||| |||||||    
T  1395620 gctatttctataacaaaagataaaataaagtcaaattatttt 1395661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 341 - 392
Target Start/End: Complemental strand, 44032049 - 44031998
Alignment:
Q  341 tatcttgaagtgcttatggaaatcatttgaaaatagtttatggacatgtcat 392  Q
    |||||||||| |||||||||||| |  ||||||||| |||||||||||||||    
T  44032049 tatcttgaagagcttatggaaattagctgaaaatagcttatggacatgtcat 44031998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 271 - 310
Target Start/End: Original strand, 45234148 - 45234187
Alignment:
Q  271 tatttctataataaaacataaaataaagtcaagttatttt 310  Q
    |||||||||||||||| ||||||||||||||| |||||||    
T  45234148 tatttctataataaaagataaaataaagtcaaattatttt 45234187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 310
Target Start/End: Original strand, 50319241 - 50319282
Alignment:
Q  269 gctatttctataataaaacataaaataaagtcaagttatttt 310  Q
    ||||||||||||| |||| |||||||||||||||||| ||||    
T  50319241 gctatttctataacaaaagataaaataaagtcaagttgtttt 50319282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 302
Target Start/End: Complemental strand, 1470977 - 1470944
Alignment:
Q  269 gctatttctataataaaacataaaataaagtcaa 302  Q
    |||||||||||||||||| |||||||||||||||    
T  1470977 gctatttctataataaaagataaaataaagtcaa 1470944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 310
Target Start/End: Original strand, 4558747 - 4558788
Alignment:
Q  269 gctatttctataataaaacataaaataaagtcaagttatttt 310  Q
    |||||||||||||||||| |||||||||||| || |||||||    
T  4558747 gctatttctataataaaagataaaataaagttaaattatttt 4558788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 396
Target Start/End: Complemental strand, 31875646 - 31875590
Alignment:
Q  340 ctatcttgaagtgcttatggaaatcatttgaaaatagtttatggacatgtcataagt 396  Q
    ||||||| ||| ||||||| |||| | |||||||| | |||||||||||||||||||    
T  31875646 ctatcttcaagagcttatgaaaataagttgaaaatggcttatggacatgtcataagt 31875590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 302
Target Start/End: Original strand, 35960364 - 35960396
Alignment:
Q  270 ctatttctataataaaacataaaataaagtcaa 302  Q
    ||||||||||||||||| |||||||||||||||    
T  35960364 ctatttctataataaaagataaaataaagtcaa 35960396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University