View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18339_low_26 (Length: 410)
Name: NF18339_low_26
Description: NF18339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18339_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 25 - 401
Target Start/End: Complemental strand, 14916111 - 14915741
Alignment:
| Q |
25 |
gtaatgatcttgaattcatggcctttttaaagtaccacatgatcctctcagtatcacattggtgtcccaatactagctagtacatattcatagtaaactt |
124 |
Q |
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| T |
14916111 |
gtaatgatcttgaattcatggcctttttaaagtaccacatgatcctcac--tatcacattggtgtcccaatactagctagtacatattcatagtaaactt |
14916014 |
T |
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| Q |
125 |
aatttcaagaataatctttacttcatcaaaagttcttaatgtataaaattccacaaacatatatatgannnnnnncacaacataaaacttataactaatg |
224 |
Q |
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| T |
14916013 |
aatttcaagaataatctttacttcatcaaaagttcttaatgtataaaattccacaaacatatatatgatttttttcacaacataaaacttataactaatg |
14915914 |
T |
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| Q |
225 |
ataatcaagttattcacatataaaaccgtaataatagtgctacataaatatatgtacatatcagcttcaatgatttcaaaatcatgtgagatactagata |
324 |
Q |
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| T |
14915913 |
ataatcaagttattcacatataaaaccgtaataatagtgctacataaatatatgtacatatcatcttcaatgatttcaaaatcatgtgagatactagata |
14915814 |
T |
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| Q |
325 |
tcc-aaatttttataagggcttcatnnnnnnnnnnnnnnntattctcatcaaactaatccaaataaaattgttcttct |
401 |
Q |
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| T |
14915813 |
tccaaaaaatttataagggcttcat-----aaaaaaaaaatattctcatcaaactaatccaaataaaattgttcttct |
14915741 |
T |
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