View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18339_low_31 (Length: 384)
Name: NF18339_low_31
Description: NF18339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18339_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 12 - 320
Target Start/End: Original strand, 4787397 - 4787705
Alignment:
| Q |
12 |
agaagcaaaggggcacgtcatggggaatggagggttatatgcatatcaaaaggaacactaataaagagtatggggtgtgtgcaatcaatgaatgggcata |
111 |
Q |
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| T |
4787397 |
agaaccaatggggcacgtcatggggaatggagggttatatgcatatcaaaaggaacactaataaagagtatggggtgtgtgcaatcaatgaatgggcata |
4787496 |
T |
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| Q |
112 |
taatccagtcaaatataattgaacgaagcattagttccattttatagatcaagaataaattacggtttaatgcttctaggttttgtttgtgtgggtaatc |
211 |
Q |
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| T |
4787497 |
taatccagtcaaatataattgaacgaagcattagttccattttatagatcaagaataaattacggtttaatgcttctaggttttgtttgtgtgggtaatc |
4787596 |
T |
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| Q |
212 |
ttgatgttgttttgaaatgttagattccctattcaaatttgtaagcatatataaataaataaatcaatggaacgatatatgttgggctttggaatcatca |
311 |
Q |
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| T |
4787597 |
ttgatgttgttttgaaatgttagattccctattctaatttgtaagcatatataaataaataaatcaatggaacgatatatgttgggctttggaatcatca |
4787696 |
T |
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| Q |
312 |
ttagtacca |
320 |
Q |
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| T |
4787697 |
ttagtacca |
4787705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 12 - 130
Target Start/End: Original strand, 4782651 - 4782769
Alignment:
| Q |
12 |
agaagcaaaggggcacgtcatggggaatggagggttatatgcatatcaaaaggaacactaataaagagtatggggtgtgtgcaatcaatgaatgggcata |
111 |
Q |
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| T |
4782651 |
agaaccaatggggcacgtcatggggaatggagggttatatgcatatcaaaaggaacacaaataaaaagtatggggtgtgtgctataaattcatgggctta |
4782750 |
T |
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| Q |
112 |
taatccagtcaaatataat |
130 |
Q |
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| T |
4782751 |
taatccagtcaaatataat |
4782769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 336 - 366
Target Start/End: Original strand, 4788833 - 4788863
Alignment:
| Q |
336 |
aactgcttttaactgtcatggtgactgaggt |
366 |
Q |
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| T |
4788833 |
aactgcttttaactgtcatggtgactgaggt |
4788863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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