View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18339_low_33 (Length: 369)
Name: NF18339_low_33
Description: NF18339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18339_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 90 - 353
Target Start/End: Original strand, 48143595 - 48143871
Alignment:
| Q |
90 |
tatatatatatgcaaatgtgttgttagataaaatgaatgaatatgacgtatgatataggacggcttagttgagatcgtggtgaagagtctgtctgagttg |
189 |
Q |
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| T |
48143595 |
tatatatatatgcaaatgtgttgttagataaaatgaatgaatatgacgtatgatataggacggcttagttgagatcgtggtgaagagtctgtctgagttg |
48143694 |
T |
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| Q |
190 |
aaattctaaaacaaaactgtcttgaatggttgaaactagacaacacaatctgcttactgtgtttttgtctgttaaaaacctactac-------------a |
276 |
Q |
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| T |
48143695 |
aaattctaaaacaaaactgtcttgaatggttgaaactagacaacacaatctgcttactgtgtttttgtctgttaaaaacctactacatttcagttttaga |
48143794 |
T |
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| Q |
277 |
ttttcacaagcccattatatttatacgtggatggatatgatacaagttcatcattggtctagtttatttgtggtaat |
353 |
Q |
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| T |
48143795 |
ttttcacaagcccattatatttatacgtggatggatatgatacaagttcatcattggtctagtttatttgtggtaat |
48143871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 41 - 100
Target Start/End: Original strand, 48143522 - 48143581
Alignment:
| Q |
41 |
atctgtcaattgtgagacagacgtggggtttgcatttaaaaaatgagattatatatatat |
100 |
Q |
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| T |
48143522 |
atctgtcaattgtgagacagacgtgggatttgcatttaaaaaatgagattatatatatat |
48143581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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