View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18339_low_36 (Length: 363)
Name: NF18339_low_36
Description: NF18339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18339_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 139 - 347
Target Start/End: Original strand, 10031819 - 10032027
Alignment:
| Q |
139 |
gatacatatatgtaatgttatcactcgagcatagattcaaaagaagcataacattcaaagaagtatgattttgcagacataacttggtatccatcaagcc |
238 |
Q |
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| T |
10031819 |
gatacatatatgtaatgttatcacttgagcatagattcaaaagaagcataacattcaaagaagtatgattttgcagacataacttggtatccatcaagcc |
10031918 |
T |
|
| Q |
239 |
aatgaaatattggtctctcgaacatttagagcagcaggtaactaatgatctcatctagtattgttctaaaattattgtcattttattcttaaggagcaat |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10031919 |
aatgaaatattggtctctcgaacatttagagcagcaggtaactaatgatctcatctagtattgttctaaaattattgtcattttattcttaaggagcaat |
10032018 |
T |
|
| Q |
339 |
aacgttatt |
347 |
Q |
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||||||||| |
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| T |
10032019 |
aacgttatt |
10032027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 92 - 223
Target Start/End: Original strand, 20428393 - 20428522
Alignment:
| Q |
92 |
tgctagcaaagcaatttagttcatgatctaaattatcattgttagacgatacatatatgtaatgttatcactcgagcatagattcaaaagaagcataaca |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| |||||||| || ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
20428393 |
tgctagcaaagcaatttagttcatgatctaaattatcaatgttaaacgatacacat--gtaatgttatcactcgagcataggttcaaaagaagcataaca |
20428490 |
T |
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| Q |
192 |
ttcaaagaagtatgattttgcagacataactt |
223 |
Q |
| |
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||||||||||||||| |||||||||||||||| |
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| T |
20428491 |
ttcaaagaagtatgagtttgcagacataactt |
20428522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 232 - 347
Target Start/End: Original strand, 20428606 - 20428721
Alignment:
| Q |
232 |
tcaagccaatgaaatattggtctctcgaacatttagagcagcaggtaactaatgatctcatctagtattgttctaaaattattgtcattttattcttaag |
331 |
Q |
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|||||| |||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
20428606 |
tcaagcaaatgaaatattgatctctcagtcatttagagcagtaggtaactaatgatctcatctagtattgttctaaaattattgtcattttattctttgg |
20428705 |
T |
|
| Q |
332 |
gagcaataacgttatt |
347 |
Q |
| |
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|| ||||||| ||||| |
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| T |
20428706 |
gatcaataacattatt |
20428721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 92 - 196
Target Start/End: Complemental strand, 8715971 - 8715870
Alignment:
| Q |
92 |
tgctagcaaagcaatttagttcatgatctaaattatcattgttagacgatacatatatgtaatgttatcactcgagcatagattcaaaagaagcataaca |
191 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||| ||| ||||| | || | ||||||||| ||||||||||||||||||||||||||| |
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| T |
8715971 |
tgctagcatagcaatttagttcatgttctaaattatcattattaaacgatgtc---aggtgaagttatcacttgagcatagattcaaaagaagcataaca |
8715875 |
T |
|
| Q |
192 |
ttcaa |
196 |
Q |
| |
|
||||| |
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|
| T |
8715874 |
ttcaa |
8715870 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 232 - 325
Target Start/End: Complemental strand, 8734520 - 8734428
Alignment:
| Q |
232 |
tcaagccaatgaaatattggtctctcgaacatttagagcagcaggtaactaatgatctcatctagtattgttctaaaattattgtcattttatt |
325 |
Q |
| |
|
|||||||||||||||||||||||| | || |||||||||||||||| |||| ||||||||| |||| |||| ||||||||||||| ||||| |
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| T |
8734520 |
tcaagccaatgaaatattggtctcgcagtcagttagagcagcaggtaa-taataatctcatcttgtatcgttcacaaattattgtcatgttatt |
8734428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 92 - 196
Target Start/End: Complemental strand, 8734788 - 8734686
Alignment:
| Q |
92 |
tgctagcaaagcaatttagttcatgatctaaattatcattgttagacgatacatatatgtaatgttatcactcgagcatagattcaaaagaagcataaca |
191 |
Q |
| |
|
|||| ||||||||||||||| |||| |||||||||| ||||||| | |||| || | |||| | |||||||||||||||| |||||||||||||| || |
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| T |
8734788 |
tgctggcaaagcaatttagtccatgttctaaattattattgttaaatgata--tacaggtaaagctatcactcgagcataggttcaaaagaagcattgca |
8734691 |
T |
|
| Q |
192 |
ttcaa |
196 |
Q |
| |
|
||||| |
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|
| T |
8734690 |
ttcaa |
8734686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 8734647 - 8734599
Alignment:
| Q |
188 |
aacattcaaagaagtatgattttgcagacataacttggtatccatcaag |
236 |
Q |
| |
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||||| ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
8734647 |
aacatgcaaagaagtatgagtttgcagacataacttggtatccatcaag |
8734599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 319
Target Start/End: Complemental strand, 8715705 - 8715619
Alignment:
| Q |
232 |
tcaagccaatgaaatattggtctctcgaacatttagagcagcaggtaactaatgatctcatctagtattgttctaaaattattgtcat |
319 |
Q |
| |
|
||||||||| ||||||||||| |||| || |||||||||||||||| |||||||||||||| || ||||||||||||||| |||| |
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| T |
8715705 |
tcaagccaacgaaatattggtatctcagtcagttagagcagcaggtaa-taatgatctcatcttgtgctgttctaaaattattttcat |
8715619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 196
Target Start/End: Complemental strand, 8712470 - 8712370
Alignment:
| Q |
96 |
agcaaagcaatttagttcatgatctaaattatcattgttagacgatacatatatgtaatgttatcactcgagcatagattcaaaagaagc--ataacatt |
193 |
Q |
| |
|
||||||||| ||||||||||| ||||||||| |||||||| | ||| || |||||||||||||| | || | ||| |||||||||||| |||||||| |
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|
| T |
8712470 |
agcaaagcattttagttcatgttctaaattagcattgttaaatgat--gtacatgtaatgttatcaattgatcgtaggttcaaaagaagcgaataacatt |
8712373 |
T |
|
| Q |
194 |
caa |
196 |
Q |
| |
|
||| |
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|
| T |
8712372 |
caa |
8712370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 3079351 - 3079311
Alignment:
| Q |
53 |
ccaaaatctccagctatgtattcgtcactcttgaacacctg |
93 |
Q |
| |
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|||| |||||||||||||||||| |||||||||| |||||| |
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|
| T |
3079351 |
ccaacatctccagctatgtattcttcactcttgagcacctg |
3079311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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