View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18339_low_40 (Length: 332)
Name: NF18339_low_40
Description: NF18339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18339_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 321
Target Start/End: Original strand, 38370447 - 38370750
Alignment:
| Q |
19 |
catggtcaccctcagaatatgctgagttacagctctcaccaataaaatccatactacatnnnnnnnnnnnnnnnnnnnntcaaacaaacaaacacactca |
118 |
Q |
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| T |
38370447 |
catgatcaccatcagaatatgctgagttacagctctcaccaataaaatccatactacataaaaaagaagaaaaaaaaaatcaaacaaataaacacactca |
38370546 |
T |
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| Q |
119 |
aactctaccacattcgaaactcattagcgtgtatagcaatatacaaaaacgacaaccctgaggattaattttacttgcaatcaaagagataacagactct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
38370547 |
aactctaccacattcgaaactcattagcgtgtatagcaatatacaaaaacgacaaccctgaggattaattttacttgctatcaaagagataacagactct |
38370646 |
T |
|
| Q |
219 |
tgaagtggagttaatgaaaatgccaaaagaattgttttcattattttcaaaattgcat-atcgcttagctaacatttcattttctctacatcacaacggt |
317 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
38370647 |
tgaagtggaattaatgaaaatgccaaaagaattgttttcattattttcaaaattgcatcatcgcttagctaacatttcattttctctacattacaacggt |
38370746 |
T |
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| Q |
318 |
tcat |
321 |
Q |
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|||| |
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| T |
38370747 |
tcat |
38370750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 320
Target Start/End: Original strand, 12573996 - 12574073
Alignment:
| Q |
243 |
aaaagaattgttttcattattttcaaaattgcat-atcgcttagctaacatttcattttctctacatcacaacggttca |
320 |
Q |
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|||||||||||||||||||||| || || ||||| ||| | |||||| |||||||| |||||| |||||||| |||||| |
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| T |
12573996 |
aaaagaattgttttcattatttccataaatgcatcatc-catagctagcatttcatcttctctccatcacaatggttca |
12574073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 276
Target Start/End: Complemental strand, 38217089 - 38217051
Alignment:
| Q |
238 |
atgccaaaagaattgttttcattattttcaaaattgcat |
276 |
Q |
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||||||||||||||||||||||||||| ||||| ||||| |
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| T |
38217089 |
atgccaaaagaattgttttcattatttccaaaaatgcat |
38217051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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