View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18339_low_41 (Length: 332)
Name: NF18339_low_41
Description: NF18339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18339_low_41 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 14 - 316
Target Start/End: Complemental strand, 35425079 - 35424775
Alignment:
| Q |
14 |
atgaacacatgttcttaattttatttttaaatcatttgaacctttaattaaatctaacgttattttgtaaatggtccactgataaaagacttaattgaat |
113 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
35425079 |
atgaacacatgttcttaattttattttcaaatcatttgaacctttaattaaatccaacgttattttgtaaatggtccactgataaaagatttaattgaac |
35424980 |
T |
|
| Q |
114 |
ctttaccgtaaaatccatcataaaaattatatattaactcacatcattaaaaataattaaaagaacaaatagtctcacttagaaaattgtcctaatcatc |
213 |
Q |
| |
|
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35424979 |
cttcaccataaaatccatcataaaaattatatattaactcacatcattaaaaataattaaaagaacaaatagtctcacttagaaaattgtcctaatcatc |
35424880 |
T |
|
| Q |
214 |
tctctcaaaacaaattctttggttgccannnnnnnattttactggttctataaagtgtatgt--tatgtgtgttggaattattactagctttgtacttat |
311 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
35424879 |
tctctcaaaacaaattctttggttgccatttttttattttactggttctataaagtgtatgttatatgtgtgttggaattattactagctttgtacttat |
35424780 |
T |
|
| Q |
312 |
atttg |
316 |
Q |
| |
|
||||| |
|
|
| T |
35424779 |
atttg |
35424775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 112
Target Start/End: Complemental strand, 5312359 - 5312261
Alignment:
| Q |
14 |
atgaacacatgttcttaattttatttttaaatcatttgaacctttaattaaatctaacgttattttgtaaatggtccactgataaaagacttaattgaa |
112 |
Q |
| |
|
|||||||||| |||||||||||||||| || | || | ||||||| |||||||| ||||||||||| ||||| |||||| | | |||||||||||| |
|
|
| T |
5312359 |
atgaacacatattcttaattttattttcaactaatctaaacctttgattaaatccaacgttatttttctaatggaccactggtgagggacttaattgaa |
5312261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 16718962 - 16719002
Alignment:
| Q |
52 |
aacctttaattaaatctaacgttattttgtaaatggtccac |
92 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
16718962 |
aacctttaattaaatctaacgatattttgttcatggtccac |
16719002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 9147792 - 9147857
Alignment:
| Q |
14 |
atgaacacatgttcttaattttatttttaaatcatttgaacctttaattaaatctaacgttatttt |
79 |
Q |
| |
|
|||||||||| |||||||||||||||| || | || | ||||||| |||||||| ||||||||||| |
|
|
| T |
9147792 |
atgaacacatattcttaattttattttcaactaatctaaacctttgattaaatccaacgttatttt |
9147857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 54753695 - 54753630
Alignment:
| Q |
14 |
atgaacacatgttcttaattttatttttaaatcatttgaacctttaattaaatctaacgttatttt |
79 |
Q |
| |
|
|||||||||| |||||||||||||||| || | || | ||||||| |||||||| ||||||||||| |
|
|
| T |
54753695 |
atgaacacatattcttaattttattttcaactaatctaaacctttgattaaatccaacgttatttt |
54753630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 53346426 - 53346491
Alignment:
| Q |
14 |
atgaacacatgttcttaattttatttttaaatcatttgaacctttaattaaatctaacgttatttt |
79 |
Q |
| |
|
|||||||||| |||||||||||||||| || | || | ||||||| |||||||| ||| ||||||| |
|
|
| T |
53346426 |
atgaacacatattcttaattttattttcaactaatctaaacctttgattaaatccaacattatttt |
53346491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University