View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18339_low_42 (Length: 322)
Name: NF18339_low_42
Description: NF18339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18339_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 4 - 306
Target Start/End: Complemental strand, 3745855 - 3745553
Alignment:
| Q |
4 |
atcaaaggatgagtttagtttgttcatggctatgacttttgctttcattgaaggaaagtataatggtagtactattactatcttggggagaaattctgct |
103 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3745855 |
atcaaaggatgagtttagtttgttcatggctatgacttttgctttcattgaaggaaagtataatgggagtactattactatcttggggagaaattctgct |
3745756 |
T |
|
| Q |
104 |
cttaataaggttagggaaatgcctattgttggtggtaccggacgttttagatttgcaagaggctatgctcaaactaaaacttatcaatatgattctcaag |
203 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3745755 |
cttaataaggttagggaaatgcctattgttggtggtaccggacgttttagatttgcaagaggctatgctcaaactaaaacttatcaatatgattctcaag |
3745656 |
T |
|
| Q |
204 |
atactactgttgagtacaatgtttatgttttttactattgattgttaattattgttgttgctcatgttatgtttatttcatgatttgagtttgtcatgaa |
303 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3745655 |
atactactgttgagtacaatgtttatgttttttactattgattgttaattattgttgttgctcatgttatgtttatttcatgatttgtgtttgtcatgaa |
3745556 |
T |
|
| Q |
304 |
aaa |
306 |
Q |
| |
|
||| |
|
|
| T |
3745555 |
aaa |
3745553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 40 - 175
Target Start/End: Complemental strand, 3762615 - 3762480
Alignment:
| Q |
40 |
ttttgctttcattgaaggaaagtataatggtagtactattactatcttggggagaaattctgctcttaataaggttagggaaatgcctattgttggtggt |
139 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||| |||||| |||||||||| |
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| T |
3762615 |
ttttgctttcattgaaggaaagtataatggtagtactattactatcttggggaggaatccagctcttaataaggttagggagatgcctgttgttggtggc |
3762516 |
T |
|
| Q |
140 |
accggacgttttagatttgcaagaggctatgctcaa |
175 |
Q |
| |
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| |||| ||| |||||||| ||||| ||||||||| |
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| T |
3762515 |
agtggacttttcagatttgctagaggatatgctcaa |
3762480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 35 - 172
Target Start/End: Complemental strand, 3776701 - 3776564
Alignment:
| Q |
35 |
atgacttttgctttcattgaaggaaagtataatggtagtactattactatcttggggagaaattctgctcttaataaggttagggaaatgcctattgttg |
134 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||| |||||||||||||||||||||| |||||| |
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| T |
3776701 |
atgaattttgctttcattgaaggaaagtataatggtagtaccattactatcttggggaggaatcatgctcgtaataaggttagggaaatgcctgttgttg |
3776602 |
T |
|
| Q |
135 |
gtggtaccggacgttttagatttgcaagaggctatgct |
172 |
Q |
| |
|
|||||| |||| ||| |||||||| ||||| |||||| |
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|
| T |
3776601 |
gtggtagtggacttttcagatttgctagaggttatgct |
3776564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 27 - 262
Target Start/End: Complemental strand, 3751649 - 3751408
Alignment:
| Q |
27 |
tcatggctatgacttttgctttcattgaaggaaagtataatggtagtactattactatcttggggagaaattctgctcttaataaggttagggaaatgcc |
126 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| | ||||||||| ||| || ||||| |
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| T |
3751649 |
tcatggctatgaactttgctttcattgaaggaaagtataatggtagtacaattactatcttggggaggaattctggtattaataaggctagagagatgcc |
3751550 |
T |
|
| Q |
127 |
tattgttggtggtaccggacgttttagatttgcaagaggctatgctcaaactaaaacttatcaatatgattctca-------agatactactgttgagta |
219 |
Q |
| |
|
|||| ||||||||| |||| ||| |||||||| ||||| |||||| || ||| ||| || | ||| ||||| |||| ||| ||||||||| |
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| T |
3751549 |
tattattggtggtagtggacttttcagatttgctagaggatatgctaaagctactactcattggtttga-tctcaaaactggagatgctattgttgagta |
3751451 |
T |
|
| Q |
220 |
caatgtttatgttttttactattgattgttaattattgttgtt |
262 |
Q |
| |
|
|||||||||||||||| |||||||||| ||| || |||||||| |
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|
| T |
3751450 |
caatgtttatgtttttcactattgatttttagttgttgttgtt |
3751408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 35 - 263
Target Start/End: Complemental strand, 3781014 - 3780780
Alignment:
| Q |
35 |
atgacttttgctttcattgaaggaaagtataatggtagtactattactatcttggggagaaattctgctcttaataaggttagggaaatgcctattgttg |
134 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| |||||||| | ||||| ||| |||| ||||| ||||||||| |||||| |||||| |
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|
| T |
3781014 |
atgaattttgctttcattgaaggaaagtataatggtagtactcttactatcgtagggaggaatcctgccattaatttggttagggagatgcctgttgttg |
3780915 |
T |
|
| Q |
135 |
gtggtaccggacgttttagatttgcaagaggctatgctcaaactaaaacttatcaatatgattctcaa-------gatactactgttgagtacaatgttt |
227 |
Q |
| |
|
|||||| |||| ||| |||||||| ||||| ||||||||| |||| ||| || ||||| |||| ||| || |||||||||||||||| |
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| T |
3780914 |
gtggtagtggacttttcagatttgctagaggatatgctcaagctaatactcattggattgatt-tcaaaactggggatgcttgtgttgagtacaatgttc |
3780816 |
T |
|
| Q |
228 |
atgttttttactattgattgttaattattgttgttg |
263 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
3780815 |
atgtttttcactattgattgttgattattgttgttg |
3780780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 29 - 263
Target Start/End: Complemental strand, 3755514 - 3755274
Alignment:
| Q |
29 |
atggctatgacttttgctttcattgaaggaaagtataatggtagtactattactatcttggggagaaattctgctcttaataaggttagggaaatgccta |
128 |
Q |
| |
|
|||||||||| ||||||||| | |||||||||||||||||| ||||| ||||||| ||||| || ||| ||| | || |||| ||||| || |||||| |
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|
| T |
3755514 |
atggctatgaattttgcttttactgaaggaaagtataatggaagtacacttactatattgggaaggaatgctgtttttcataaagttagagagatgcctg |
3755415 |
T |
|
| Q |
129 |
ttgttggtggtaccggacgttttagatttgcaagaggctatgctcaaactaaaacttatcaatatgat------tctcaagatactactgttgagtacaa |
222 |
Q |
| |
|
| ||||||||| ||| ||| |||||||| ||||| |||||| || |||| ||| || | |||| ||| ||| ||| ||||||||| || |
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|
| T |
3755414 |
tgattggtggtagtggatttttcagatttgctagaggttatgctgaagctaatactcattggtttgatatcaaatctggggatgctattgttgagtataa |
3755315 |
T |
|
| Q |
223 |
tgtttatgttttttactattgattgttaattattgttgttg |
263 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
3755314 |
tgtttatgtttttcactattgattgttaattattgttgttg |
3755274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 263
Target Start/End: Complemental strand, 3767042 - 3766802
Alignment:
| Q |
29 |
atggctatgacttttgctttcattgaaggaaagtataatggtagtactattactatcttggggagaaattctgctcttaataaggttagggaaatgccta |
128 |
Q |
| |
|
|||||||||| ||||||||| | |||||||||||||||||| ||||| ||||||| ||||| || ||| ||| | || |||| ||||| || |||||| |
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|
| T |
3767042 |
atggctatgaattttgcttttactgaaggaaagtataatggaagtacacttactatattgggaaggaatgctgtttttcataaagttagagagatgcctg |
3766943 |
T |
|
| Q |
129 |
ttgttggtggtaccggacgttttagatttgcaagaggctatgctcaaactaaaactta-tcaatatgat------tctcaagatactactgttgagtaca |
221 |
Q |
| |
|
| ||||||||| ||| ||| |||||||| ||||| |||||| || |||| ||| | || || |||| ||| | ||| || ||||||||||| |
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|
| T |
3766942 |
tgattggtggtagtggagttttcagatttgctagaggttatgctgaagctaatactcattcgat-tgatttcaaatctgaggatgcttgtgttgagtaca |
3766844 |
T |
|
| Q |
222 |
atgtttatgttttttactattgattgttaattattgttgttg |
263 |
Q |
| |
|
||||| |||||||| |||||| |||||||| ||||||||||| |
|
|
| T |
3766843 |
atgttcatgtttttcactattaattgttaactattgttgttg |
3766802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 263
Target Start/End: Complemental strand, 3776519 - 3776467
Alignment:
| Q |
211 |
tgttgagtacaatgtttatgttttttactattgattgttaattattgttgttg |
263 |
Q |
| |
|
|||||||||||||||| | |||||| ||||||||||||||||||||||||||| |
|
|
| T |
3776519 |
tgttgagtacaatgttcacgtttttcactattgattgttaattattgttgttg |
3776467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 263
Target Start/End: Complemental strand, 3762436 - 3762386
Alignment:
| Q |
213 |
ttgagtacaatgtttatgttttttactattgattgttaattattgttgttg |
263 |
Q |
| |
|
||||||||||| || |||||||| | ||||||||||||||| ||||||||| |
|
|
| T |
3762436 |
ttgagtacaatcttcatgtttttcattattgattgttaatttttgttgttg |
3762386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 27 - 175
Target Start/End: Original strand, 25985491 - 25985639
Alignment:
| Q |
27 |
tcatggctatgacttttgctttcattgaaggaaagtataatggtagtactattactatcttggggagaaattctgctcttaataaggttagggaaatgcc |
126 |
Q |
| |
|
|||||||||||| ||||||| | |||||||| ||||| |||||||| || || ||||| |||||||| ||| ||| | | ||||||||||||||||||| |
|
|
| T |
25985491 |
tcatggctatgaattttgctataattgaagggaagtacaatggtagcaccatcactattttggggaggaatcctgtttctgataaggttagggaaatgcc |
25985590 |
T |
|
| Q |
127 |
tattgttggtggtaccggacgttttagatttgcaagaggctatgctcaa |
175 |
Q |
| |
|
||| ||||||||| || | ||| ||||||| ||||| ||||||||| |
|
|
| T |
25985591 |
tataattggtggtagtggtcttttccgatttgctagaggatatgctcaa |
25985639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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