View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18339_low_43 (Length: 317)
Name: NF18339_low_43
Description: NF18339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18339_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 44614801 - 44615112
Alignment:
| Q |
1 |
gttatgggtaggaatagcaaaggatcaataaataacagtttttgttaaaactttagtgtttgattgtgttttgttaggcttttaatttcaagtttgagag |
100 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
44614801 |
gttatgggtaggaatagcaaaggatcaataaatgacagtttttgttaaaactttagtgtttgattgtgttttgttaggcttttaatttcaattttgagag |
44614900 |
T |
|
| Q |
101 |
tttttgtatggaaatcttctgctatcatgttattaatgtaataaatggaattttgttaaaactttagtgtgtgactgtgttttgttatggcttctgctat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
44614901 |
tttttgtatggaaatcttctgctatcatgttattaatgtaataaatggaattttgttaaaactttagtgtgtgattgtgttttgttatggcttctgctat |
44615000 |
T |
|
| Q |
201 |
caatttaataatgtaataaatcctccaaacataacaaagaattataagagtcatcagtgacttaaatattatttattagcacaattattcacccacttat |
300 |
Q |
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| T |
44615001 |
caatttaataatgtaataaatcctccaaacataacaaagaattataagagtcatcagtgacttaaatattctttattagcacaattattcacccacttat |
44615100 |
T |
|
| Q |
301 |
gcctttgctact |
312 |
Q |
| |
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||||||| |||| |
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| T |
44615101 |
gcctttgttact |
44615112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 44793768 - 44793457
Alignment:
| Q |
1 |
gttatgggtaggaatagcaaaggatcaataaataacagtttttgttaaaactttagtgtttgattgtgttttgttaggcttttaatttcaagtttgagag |
100 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||| |
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| T |
44793768 |
gttatgggtaggaatagcaaaggatcaataaatgacagtttttgttaaaactttagtgtttgattgtgttttgtttggctttcaatttcaattttgagag |
44793669 |
T |
|
| Q |
101 |
tttttgtatggaaatcttctgctatcatgttattaatgtaataaatggaattttgttaaaactttagtgtgtgactgtgttttgttatggcttctgctat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
44793668 |
tttttgtatggaaatcttctgctatcatgttattaatgtaataaatggaattttgttaaaactttagtgtgtgattgtgttttgttatggcttctgctat |
44793569 |
T |
|
| Q |
201 |
caatttaataatgtaataaatcctccaaacataacaaagaattataagagtcatcagtgacttaaatattatttattagcacaattattcacccacttat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44793568 |
caatttaataatgtaataaatcctccaaacataacaaagaattttaagagtcatcagtgacttaaatattctttattagcacaattattcacccacttat |
44793469 |
T |
|
| Q |
301 |
gcctttgctact |
312 |
Q |
| |
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||||||| |||| |
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| T |
44793468 |
gcctttgttact |
44793457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 44789913 - 44789760
Alignment:
| Q |
1 |
gttatgggtaggaatagcaaaggatcaataaataacagtttttgttaaaactttagtgtttgattgtgttttgttaggcttttaatttcaagtttgagag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| || |
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| T |
44789913 |
gttatgggtaggaatagcaaaggatcaataaatgacagtttttgttaaaactttagtgtttgattgtgttttgtttggctttcaatttcaagtttgacag |
44789814 |
T |
|
| Q |
101 |
tttttgtatggaaatcttctgctatcatgttattaatgtaataaatggaatttt |
154 |
Q |
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|||||||||| ||||||||||||||| || |||||||||||||||||| |||| |
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| T |
44789813 |
tttttgtatgaaaatcttctgctatcgagtgattaatgtaataaatggattttt |
44789760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 55 - 212
Target Start/End: Original strand, 44146823 - 44146980
Alignment:
| Q |
55 |
agtgtttgattgtgttttgttaggcttttaatttcaagtttgagagtttttgtatggaaatcttctgctatcatgttattaatgtaataaatggaatttt |
154 |
Q |
| |
|
|||||||||||||||||| || ||||| ||||||||| |||| |||||||||||||||||||||||| ||| |||| |||||||||| ||||| |||| |
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| T |
44146823 |
agtgtttgattgtgtttttttctgctttcaatttcaaggttgacagtttttgtatggaaatcttctgccatcgagttaataatgtaatagatggagtttt |
44146922 |
T |
|
| Q |
155 |
gttaaaactttagtgtgtgactgtgttttgttatggcttctgctatcaatttaataat |
212 |
Q |
| |
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||||||| ||||||| ||||||||||||||||||||||||| |||| | |||||||| |
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| T |
44146923 |
gttaaaattttagtgcttgactgtgttttgttatggcttctgttatcgagttaataat |
44146980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 55 - 200
Target Start/End: Complemental strand, 44783517 - 44783372
Alignment:
| Q |
55 |
agtgtttgattgtgttttgttaggcttttaatttcaagtttgagagtttttgtatggaaatcttctgctatcatgttattaatgtaataaatggaatttt |
154 |
Q |
| |
|
|||||||||||||||||| || |||| ||||||||||||| ||||||||| |||||||||||||||| |||| |||||||||||||||| || | |
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| T |
44783517 |
agtgtttgattgtgtttttttctactttcaatttcaagtttggtgatttttgtattgaaatcttctgctatcgagttaataatgtaataaatggacttct |
44783418 |
T |
|
| Q |
155 |
gttaaaactttagtgtgtgactgtgttttgttatggcttctgctat |
200 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
44783417 |
gttaaaactttagtgtgtgactaggttttgttatggcttctgctat |
44783372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 44789743 - 44789646
Alignment:
| Q |
138 |
gtaataaatggaattttgttaaaactttagtgtgtgactgtgttttgttatggcttctgctatcaatttaataatgtaataaatcctccaaacataacaa |
237 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
44789743 |
gtaataaatggaattttgttaaaactttagtgtgtgactgtgctt--ttatggcttctgct-tcaatttaataatgtaatacatcctccaaacataacaa |
44789647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 8 - 121
Target Start/End: Complemental strand, 29505285 - 29505175
Alignment:
| Q |
8 |
gtaggaatagcaaaggatcaataaataacagtttttgttaaaactttagtgtttgattgtgttttgttaggcttttaatttcaagtttgagagtttttgt |
107 |
Q |
| |
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|||||||||| ||||||| ||||||| ||| ||||||||| |||||||||||| ||||||||| |||||||||| |||||||||||||| ||||||||| |
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| T |
29505285 |
gtaggaataggaaaggatgaataaatgaca--ttttgttaagactttagtgttttattgtgttt-gttaggctttcaatttcaagtttgacagtttttgt |
29505189 |
T |
|
| Q |
108 |
atggaaatcttctg |
121 |
Q |
| |
|
|||||||||||||| |
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|
| T |
29505188 |
atggaaatcttctg |
29505175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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