View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18339_low_44 (Length: 317)

Name: NF18339_low_44
Description: NF18339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18339_low_44
NF18339_low_44
[»] chr7 (2 HSPs)
chr7 (2-309)||(46383607-46383905)
chr7 (28-250)||(46383039-46383256)
[»] chr6 (17 HSPs)
chr6 (111-227)||(1827360-1827476)
chr6 (157-235)||(6526110-6526188)
chr6 (126-235)||(1828240-1828349)
chr6 (126-235)||(6457083-6457192)
chr6 (126-227)||(6465043-6465144)
chr6 (253-309)||(6526296-6526353)
chr6 (29-238)||(6473399-6473601)
chr6 (105-235)||(1839247-1839377)
chr6 (253-309)||(6457297-6457354)
chr6 (253-309)||(6465257-6465314)
chr6 (253-309)||(6473240-6473297)
chr6 (127-197)||(1832186-1832256)
chr6 (126-220)||(6505190-6505284)
chr6 (254-298)||(1827215-1827260)
chr6 (253-309)||(1831986-1832043)
chr6 (253-309)||(6516304-6516361)
chr6 (129-177)||(6516524-6516572)


Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 2 - 309
Target Start/End: Original strand, 46383607 - 46383905
Alignment:
Q  2 aacttcctctaatacttcattttttacacatgccaccacattttcagaaagaatatccaacggtgtaagtgtcgatgcagtcgccacgagttctgcatag 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||        
T  46383607 aacttcctctaatacttcattttttacacatgccaccacattttcagaaaggatatccaactgtgtaagtgtcgatgcagtcgccacgagttctgc---- 46383702  T
Q  102 actgcattgtcatataccatatggatcaaggctgcagaattgtatgcattcaaaacttcactagcactctcttgatttcttcaatcagtgaattcagtta 201  Q
         |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  46383703 -----attgtcatatcccatattgatcaaggctgcagaattgtatgcattcaaaacttcactagcactctctcgatttcttcaatcagtgaattcagtta 46383797  T
Q  202 gcccaccagcccaagaatgtaatttatacagatcaaatcactgcgtataaagatcaatcttagcaagcacgcaattcgatagagaaaatatcctaaatga 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  46383798 gcccaccagcccaagaatgtaatttatacagatcaaatcactgcgtataaagatcaatcttagcaagcacgcaattccatagagaaaatatcctaaatga 46383897  T

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Target: chr7; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 28 - 250
Target Start/End: Original strand, 46383039 - 46383256
Alignment:
Q  28 cacatgccaccacatttt--cagaaagaatatccaac-ggtgtaagtgtcgatgcagtcgccacgagttctgcatagactgcattgtcatataccatatg 124  Q
    ||||||||||||||||||  ||| |||||| |||||  |||||||||||||| ||||| || ||||||||||||| |         |||||| | |||      
T  46383039 cacatgccaccacattttagcagcaagaatttccaaatggtgtaagtgtcgaagcagttgctacgagttctgcatcg---------tcatatgcaatact 46383129  T
Q  125 gatcaaggctgcagaattgtatgcattcaaaacttcactagcactctcttgatttcttcaatcagtgaattcagttagcccaccagccc---aagaatgt 221  Q
    |||||| |||||||||| |||||||||||||  |||||||| ||||| ||||||||||| ||||||||||||||||||||  |||||||   ||||||||    
T  46383130 gatcaaagctgcagaatagtatgcattcaaagtttcactagtactcttttgatttcttccatcagtgaattcagttagcc--ccagcccaagaagaatgt 46383227  T
Q  222 aatttatacagatcaaatcactgcgtata 250  Q
    || ||||| ||||||||||| ||||||||    
T  46383228 aacttataaagatcaaatcattgcgtata 46383256  T

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Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 111 - 227
Target Start/End: Complemental strand, 1827476 - 1827360
Alignment:
Q  111 tcatataccatatggatcaaggctgcagaattgtatgcattcaaaacttcactagcactctcttgatttcttcaatcagtgaattcagttagcccaccag 210  Q
    ||||||||||||   ||||||||||||||||  ||||||||||   |||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  1827476 tcatataccatagtaatcaaggctgcagaataatatgcattcattgcttcactagcgctctcttgatttcttccatcagtgaattcagttagccctccag 1827377  T
Q  211 cccaagaatgtaattta 227  Q
    ||||||| |||| ||||    
T  1827376 cccaagagtgtagttta 1827360  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 157 - 235
Target Start/End: Original strand, 6526110 - 6526188
Alignment:
Q  157 cttcactagcactctcttgatttcttcaatcagtgaattcagttagcccaccagcccaagaatgtaatttatacagatc 235  Q
    ||||||| | ||||||||||||||||| |||||||||||| |||||||| ||||||||||| |||||||||||||||||    
T  6526110 cttcactggtactctcttgatttcttccatcagtgaattctgttagccctccagcccaagagtgtaatttatacagatc 6526188  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 126 - 235
Target Start/End: Complemental strand, 1828349 - 1828240
Alignment:
Q  126 atcaaggctgcagaattgtatgcattcaaaacttcactagcactctcttgatttcttcaatcagtgaattcagttagcccaccagcccaagaatgtaatt 225  Q
    ||||||||||| |||| |||||||||||   | |||||||  |||||||||||||| | ||||| |||||| |||||||| || |||||||| |||||||    
T  1828349 atcaaggctgcggaatagtatgcattcactgcatcactagtgctctcttgatttctaccatcagcgaattctgttagccctccggcccaagagtgtaatt 1828250  T
Q  226 tatacagatc 235  Q
    |||| |||||    
T  1828249 tataaagatc 1828240  T

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Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 126 - 235
Target Start/End: Original strand, 6457083 - 6457192
Alignment:
Q  126 atcaaggctgcagaattgtatgcattcaaaacttcactagcactctcttgatttcttcaatcagtgaattcagttagcccaccagcccaagaatgtaatt 225  Q
    ||||| ||||||| || ||||||||||| | ||||||||| ||||||||||||||||| ||| |  |||||  |||| || |||||||||||||| ||||    
T  6457083 atcaatgctgcagcatagtatgcattcacagcttcactagtactctcttgatttcttccatctgcaaattcgattagtcctccagcccaagaatgaaatt 6457182  T
Q  226 tatacagatc 235  Q
    |||| |||||    
T  6457183 tataaagatc 6457192  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 227
Target Start/End: Original strand, 6465043 - 6465144
Alignment:
Q  126 atcaaggctgcagaattgtatgcattcaaaacttcactagcactctcttgatttcttcaatcagtgaattcagttagcccaccagcccaagaatgtaatt 225  Q
    ||||| ||||| |||| ||||||||||| | ||||||||| ||||||||||||||||| |||   ||| ||||||| ||| || ||||| ||||| ||||    
T  6465043 atcaaagctgctgaatagtatgcattcacagcttcactagtactctcttgatttcttccatctccgaactcagttaaccctccggcccacgaatgcaatt 6465142  T
Q  226 ta 227  Q
    ||    
T  6465143 ta 6465144  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 309
Target Start/End: Original strand, 6526296 - 6526353
Alignment:
Q  253 gatcaatcttagcaagcac-gcaattcgatagagaaaatatcctaaatgatgatgatg 309  Q
    ||||||||||||||||||| ||||||| ||||||||| ||||||||||||| ||||||    
T  6526296 gatcaatcttagcaagcactgcaattccatagagaaagtatcctaaatgataatgatg 6526353  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 238
Target Start/End: Complemental strand, 6473601 - 6473399
Alignment:
Q  29 acatgccaccacatttt--cagaaagaatatccaacggtgtaagtgtcgatgcagtcgccacgagttctgcatagactgcattgtcatataccatatgga 126  Q
    |||||||||||||||||  ||| |||||| ||||| | |||||||||||||||| ||||   ||||||||||| |         | |||| |||||  ||    
T  6473601 acatgccaccacattttagcagcaagaatttccaatgatgtaagtgtcgatgcattcgctgtgagttctgcatcg---------ttatatgccataccga 6473511  T
Q  127 tcaaggctgcagaattgtatgcattcaaaacttcactagcactctcttgatttcttcaatcagtgaattcagttagcccaccagcccaagaatgtaattt 226  Q
    |||| |||||||||| |||||||||||   ||||||||| ||||||||| ||||||| ||| |  || || |||| ||| || ||||||||||| | |||    
T  6473510 tcaacgctgcagaatagtatgcattcacggcttcactagtactctcttggtttcttccatccgcaaactcggttaaccctccggcccaagaatgcagttt 6473411  T
Q  227 atacagatcaaa 238  Q
     || ||||||||    
T  6473410 gtaaagatcaaa 6473399  T

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Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 235
Target Start/End: Complemental strand, 1839377 - 1839247
Alignment:
Q  105 gcattgtcatataccatatggatcaaggctgcagaattgtatgcattcaaaacttcactagcactctcttgatttcttcaatcagtgaattcagttagcc 204  Q
    ||||| |||||| |||||   ||||| |||| ||||| |||||||||||    ||||||||  || ||||||||||| | ||||| ||| || |||||||    
T  1839377 gcattttcatattccataccaatcaaagctgaagaatagtatgcattcactgattcactagtgctatcttgatttctaccatcagcgaactctgttagcc 1839278  T
Q  205 caccagcccaagaatgtaatttatacagatc 235  Q
    | || |||||||| ||||||||||| |||||    
T  1839277 ctccggcccaagagtgtaatttataaagatc 1839247  T

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Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 253 - 309
Target Start/End: Original strand, 6457297 - 6457354
Alignment:
Q  253 gatcaatcttagcaagcac-gcaattcgatagagaaaatatcctaaatgatgatgatg 309  Q
    |||||||||| |||||||| ||||||| ||||||||| ||||||||||||| ||||||    
T  6457297 gatcaatctttgcaagcactgcaattccatagagaaagtatcctaaatgataatgatg 6457354  T

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Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 253 - 309
Target Start/End: Original strand, 6465257 - 6465314
Alignment:
Q  253 gatcaatcttagcaagcac-gcaattcgatagagaaaatatcctaaatgatgatgatg 309  Q
    |||||||||| |||||||| ||||||| ||||||||| ||||||||||||| ||||||    
T  6465257 gatcaatctttgcaagcacagcaattccatagagaaagtatcctaaatgataatgatg 6465314  T

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Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 253 - 309
Target Start/End: Complemental strand, 6473297 - 6473240
Alignment:
Q  253 gatcaatcttagcaagcac-gcaattcgatagagaaaatatcctaaatgatgatgatg 309  Q
    ||||||||||||||||||| ||||||| ||||||||| || |||||||||| ||||||    
T  6473297 gatcaatcttagcaagcactgcaattccatagagaaagtaacctaaatgataatgatg 6473240  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 197
Target Start/End: Complemental strand, 1832256 - 1832186
Alignment:
Q  127 tcaaggctgcagaattgtatgcattcaaaacttcactagcactctcttgatttcttcaatcagtgaattca 197  Q
    |||||||||||||||  ||||||||||   |||||||||   ||||||| ||||||| |||||||||||||    
T  1832256 tcaaggctgcagaataatatgcattcattgcttcactagtgttctcttggtttcttccatcagtgaattca 1832186  T

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Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 220
Target Start/End: Original strand, 6505190 - 6505284
Alignment:
Q  126 atcaaggctgcagaattgtatgcattcaaaacttcactagcactctcttgatttcttcaatcagtgaattcagttagcccaccagcccaagaatg 220  Q
    ||||| ||||||| || ||||||||||| | ||||||||| |||||||||||| |||| ||| |  || || |||||||| || ||||| |||||    
T  6505190 atcaatgctgcagcatagtatgcattcacagcttcactagtactctcttgattccttccatctgaaaactcggttagccctccggcccacgaatg 6505284  T

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Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 298
Target Start/End: Complemental strand, 1827260 - 1827215
Alignment:
Q  254 atcaatcttagcaagcac-gcaattcgatagagaaaatatcctaaa 298  Q
    ||||||||| |||||||| ||||||||||||||||| |||||||||    
T  1827260 atcaatctttgcaagcactgcaattcgatagagaaagtatcctaaa 1827215  T

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Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 309
Target Start/End: Complemental strand, 1832043 - 1831986
Alignment:
Q  253 gatcaatcttagcaagcac-gcaattcgatagagaaaatatcctaaatgatgatgatg 309  Q
    |||||||||| |||||||| ||||||| | ||||||| ||||||||||||| ||||||    
T  1832043 gatcaatctttgcaagcactgcaattccaaagagaaagtatcctaaatgataatgatg 1831986  T

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Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 309
Target Start/End: Complemental strand, 6516361 - 6516304
Alignment:
Q  253 gatcaatcttagcaagcac-gcaattcgatagagaaaatatcctaaatgatgatgatg 309  Q
    ||||||||||| ||||||| ||||||| ||| |||||||||||||| |||| ||||||    
T  6516361 gatcaatcttaacaagcactgcaattccataaagaaaatatcctaattgataatgatg 6516304  T

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Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 177
Target Start/End: Complemental strand, 6516572 - 6516524
Alignment:
Q  129 aaggctgcagaattgtatgcattcaaaacttcactagcactctcttgat 177  Q
    |||||||||| || ||||||||||| | ||||||||| |||||||||||    
T  6516572 aaggctgcagcatagtatgcattcacagcttcactagtactctcttgat 6516524  T

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