View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18339_low_45 (Length: 312)
Name: NF18339_low_45
Description: NF18339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18339_low_45 |
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| [»] scaffold1175 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 161; Significance: 7e-86; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 35129842 - 35130027
Alignment:
| Q |
1 |
catcccatagttggattgaataagatcatgtcaaatagcatttgactctgcaccacaactccataatattgtaaatcaagaaataaaattacaacattaa |
100 |
Q |
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| T |
35129842 |
catcccatagttggattgaataagatcatgtcaaatagcatttgactctgcagcacaactccataatattgtaaataaagaaataaaattacaacattaa |
35129941 |
T |
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| Q |
101 |
acaagttacatttgtcatacatcaatccatgttgtgtctcacatcatcatgcacaattctgctgaattgtttgaacatgttttttcccat |
190 |
Q |
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| T |
35129942 |
acaagttacatttgtcatac----atccatgttgtgtctcacatcatcatgcacaactctgctgaattgtttgaacatgttttttcccat |
35130027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 35137054 - 35137240
Alignment:
| Q |
1 |
catcccatagttggattgaataagatcatgtcaaatagcatttgactctgcaccacaactccataatattgtaaatcaagaaataaaattacaacattaa |
100 |
Q |
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| T |
35137054 |
catcccatagttggattgaataagatcatgccaaatagaatttaactctgtaacacacctccataatattttaaatcaagaaataaaattacaacattaa |
35137153 |
T |
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| Q |
101 |
acaagttacatttgtcatacatcaatccatgttgtgtctcacatcatcatgcacaattctgctgaattgtttgaacatgttttttcccat |
190 |
Q |
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| T |
35137154 |
acaagttactttttgtactcatacatccatgttgtgtctca---catcatgcactatcctgctcaattgtttgaacatgttttttcccat |
35137240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 234 - 293
Target Start/End: Original strand, 35130026 - 35130085
Alignment:
| Q |
234 |
ataaatagcatagtactctactcattcaataggcgccaacctattatttctagtcaaaat |
293 |
Q |
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| T |
35130026 |
ataaatagcatagtactctactcattcaataggcgccaacctattatttctagtcaaaat |
35130085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 228 - 293
Target Start/End: Original strand, 35137239 - 35137301
Alignment:
| Q |
228 |
attcaaataaatagcatagtactctactcattcaataggcgccaacctattatttctagtcaaaat |
293 |
Q |
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| T |
35137239 |
attcaaataaatagcatagt---ctactcattcaataggtgcgaacctattatttctagtcaaaat |
35137301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1175 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1175
Description:
Target: scaffold1175; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 387 - 341
Alignment:
| Q |
61 |
ccataatattgtaaatcaagaaataaaattacaacattaaacaagtt |
107 |
Q |
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| T |
387 |
ccatagtattttaaatcaagaaataaaattacaacaataaacaagtt |
341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 107
Target Start/End: Original strand, 14276565 - 14276611
Alignment:
| Q |
61 |
ccataatattgtaaatcaagaaataaaattacaacattaaacaagtt |
107 |
Q |
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| T |
14276565 |
ccatagtattttaaatcaagaaataaaattacaacaataaacaagtt |
14276611 |
T |
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