View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18339_low_47 (Length: 292)
Name: NF18339_low_47
Description: NF18339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18339_low_47 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 7662182 - 7662454
Alignment:
| Q |
1 |
tcattgcatataagtgaaaaattgtgatatagtttgttgatcatttctttaatttcatctcggttttttattcatctcagttagattaaatacgatttaa |
100 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
7662182 |
tcattgcttataagtgaaaaattttgatatagttt--------tttctttaatttcatctcgtttttttattcatctcggttattttaaatacgatttaa |
7662273 |
T |
|
| Q |
101 |
actcttacgaatttaggagtcgattgaacctaatcaattatactttt-caggaagaggtagcaagattgacaagtaatttggcaagtaattattcaaaca |
199 |
Q |
| |
|
|||| |||| ||||||||||| |||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7662274 |
actcctacgtatttaggagtcaattgtacctaatcaattacacttttgcaggaagaggtagcaagattgacaagtaatttagcaagtaattattcaaaca |
7662373 |
T |
|
| Q |
200 |
caaaagctgtgaacttgggacaactattgaatgtatgtaccacaaatgcacttgctagggttatgttaggaagaagagtat |
280 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7662374 |
caaaagctgtgaatttgggacaactattgaatgtatgtaccacaaatgcacttgctagggttatgttaggaagaagagtat |
7662454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 280
Target Start/End: Complemental strand, 7621998 - 7621736
Alignment:
| Q |
9 |
tataagtgaaaaattgtgatatagtttgttgatcatttctttaatttcatctcggttttttattcatctcagttagattaaatacgatttaaactcttac |
108 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||| ||| |
|
|
| T |
7621998 |
tataagtgaaaaattttgatatagttt--------tttctttaatttcatctct-ttttttattcatctcggttattttaaatacgatttaaactcctac |
7621908 |
T |
|
| Q |
109 |
gaatttaggagtcgattgaacctaatcaattatacttttcaggaagaggtagcaagattgacaagtaatttggcaagtaattattcaaacacaaaagctg |
208 |
Q |
| |
|
||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
7621907 |
gaatttaggagtcaattgtacctaatcaattacacttttcaggaagaggtagcaagattgacaagcaatttggcaagtaattattcagacacaaaagctg |
7621808 |
T |
|
| Q |
209 |
tgaacttgggacaactattgaatgtatgtaccacaaatgcacttgctagggttatgttaggaagaagagtat |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7621807 |
tgaacttgggacaactattgaatgtatgtaccaccaatgcacttgctagggttatgttaggaagaagagtat |
7621736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 65 - 236
Target Start/End: Original strand, 7665378 - 7665545
Alignment:
| Q |
65 |
tttttattcatctcagttagattaaatacgatttaaactcttacgaatttaggagtcgattgaacctaatcaattatacttttcaggaagaggtagcaag |
164 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||| || ||||||| || || | ||||| |||||||||||| | ||||||||||||||||| ||| |
|
|
| T |
7665378 |
tttttattcatctggattattttaaatacgatttaaattcatacgaatctatgatttgattggacctaatcaattgcatttttcaggaagaggtagtaag |
7665477 |
T |
|
| Q |
165 |
attgacaagtaatttggcaagtaattattcaaacacaaaagctgtgaacttgggacaactattgaatgtatg |
236 |
Q |
| |
|
||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7665478 |
attgacaagaaatttggcaagtg----ttcagacacaaaagctgtgaacttgggacaactattgaatgtatg |
7665545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 118 - 215
Target Start/End: Original strand, 7661496 - 7661593
Alignment:
| Q |
118 |
agtcgattgaacctaatcaattatacttttcaggaagaggtagcaagattgacaagtaatttggcaagtaattattcaaacacaaaagctgtgaactt |
215 |
Q |
| |
|
|||||| |||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
7661496 |
agtcgactgaatctaatcaattgtacttttcaggaagagttagcaagattgacaagtaatttggcaagtaattattcagacacaaaagttgtgaactt |
7661593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 127 - 272
Target Start/End: Original strand, 7681808 - 7681952
Alignment:
| Q |
127 |
aacctaatcaattatacttttcaggaagaggtagcaagattgacaagtaatttggcaagtaattattcaaacacaaaagctgtgaacttgggacaactat |
226 |
Q |
| |
|
||||||||||||| | |||||||||||||||| |||||||| | ||||||||||||||| |||||||| |||||| ||||||||| |||||||||| |
|
|
| T |
7681808 |
aacctaatcaattgca-ttttcaggaagaggtaacaagattggtcaacaatttggcaagtaatcattcaaactcaaaagttgtgaacttaggacaactat |
7681906 |
T |
|
| Q |
227 |
tgaatgtatgtaccacaaatgcacttgctagggttatgttaggaag |
272 |
Q |
| |
|
| ||||||||||| || ||||||||||| |||| | || ||||||| |
|
|
| T |
7681907 |
taaatgtatgtacaaccaatgcacttgccagggctgtgataggaag |
7681952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 280
Target Start/End: Original strand, 7667522 - 7667569
Alignment:
| Q |
233 |
tatgtaccacaaatgcacttgctagggttatgttaggaagaagagtat |
280 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7667522 |
tatgtaccaccaatgcacttgctaggattatgttaggaagaagagtat |
7667569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University