View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18339_low_5 (Length: 735)
Name: NF18339_low_5
Description: NF18339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18339_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 564; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 17 - 584
Target Start/End: Complemental strand, 48357594 - 48357027
Alignment:
| Q |
17 |
atgttgctgggcttcaagtcacggtgaataattttgggcttttgctcatgaagatactgcatagcttgggctatctctatgacccttgttagtctttctt |
116 |
Q |
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| T |
48357594 |
atgttgctgggcttcaagtcacggtgaataattttgggcttttgctcatgaagatactgcatagcttgggctatctctatgacccttgttagtctttctt |
48357495 |
T |
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| Q |
117 |
tgaaaggaggaagtggcacaattctatctctgcgtcttttgccaggaccataaagccactccttaagtgtggtgcttagatattcagtaacaacccaagc |
216 |
Q |
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| T |
48357494 |
tgaaaggaggaagtggcacaattctatctctgcgtcttttgccaggaccataaagccactccttaagtgtggtgcttagatattcagtaaccacccaagc |
48357395 |
T |
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| Q |
217 |
atgattaggagggtcaagacatgcacccattagattaagcacaaacctgtggcgttgctttgagagagtttcaacctcttgagcaaagaattcaacaccg |
316 |
Q |
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| T |
48357394 |
atgattaggagggtcaagacatgcacccattagattaagcacaaacctgtggcgttgctttgagagagtttcaacctcttgagcaaagaattcaacaccg |
48357295 |
T |
|
| Q |
317 |
tttgcatttgtgcgaaagaattcaggtgaaatgcacttcactgccacatcaaatccacgccatgttcccctatgaatttctgctgtggttccctgcccta |
416 |
Q |
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| T |
48357294 |
tttgcatttgtgcgaaagaattcaggtgaaatgcacttcactgccacatcaaatccacgccatgttcccctatgaatttctgctgtggttccctgcccta |
48357195 |
T |
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| Q |
417 |
ttttatcttccaattgaatctgctcaagttgatttgtatttacttattatatgttaaaatattgggtgtgtgactatagatagatatatggctagctagt |
516 |
Q |
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| T |
48357194 |
ttttatcttccaattgaatctgctcaagttgatttgtatttacttattatatgttaaaatattgggtgtgtgactatagatagatatatggctagctagt |
48357095 |
T |
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| Q |
517 |
tagattggcatacttctttaatttttctctagttttgtacttgtttatttcttaaactgaatcaaatt |
584 |
Q |
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| T |
48357094 |
tagattggcatacttctttaatttttctctagttttgtacttgtttatttcttaaactgaatcaaatt |
48357027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 622 - 722
Target Start/End: Complemental strand, 48357025 - 48356921
Alignment:
| Q |
622 |
gtcgtcaaataaatctttgttagtaaatataataaaagagaaattttctgatacttatttgtattttacagcacata----tataagtacattgatggaa |
717 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
48357025 |
gtcgtcaaataaatctttgttagtaaatataataaaagagaaattttctgatacttatttgtattttacagcacatatatatataagtacattgatggaa |
48356926 |
T |
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| Q |
718 |
atgtg |
722 |
Q |
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||||| |
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| T |
48356925 |
atgtg |
48356921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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