View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18339_low_50 (Length: 278)
Name: NF18339_low_50
Description: NF18339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18339_low_50 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 24 - 272
Target Start/End: Original strand, 40280246 - 40280500
Alignment:
| Q |
24 |
ggtagaatacgttgacgtcgtcccagcaccttattggtaggaggagaaagatctt------gttcttgatgatagtggaatggtaatttgggaattaggg |
117 |
Q |
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| T |
40280246 |
ggtagaatacgttgacgtcgtcccagcaccttattggtaggaggagaaagatcttgttcttgttcttgatgatagtggaatggtaatttgggaattaggg |
40280345 |
T |
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| Q |
118 |
caagattattagggttagagtcaaaattaggaggacgaggaagagaagtgatgagttcggaatagaagaatgtttgaggatcaatagggcgtgtgggggg |
217 |
Q |
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| T |
40280346 |
caagattattagggttagagtcaaaattaggaggacgaggaagagaagtgatgagttcggaatagaagaatgtttgaggatcaatagggcgtgtggaggg |
40280445 |
T |
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| Q |
218 |
tgttaatggcgtgtattcaaatggtggaggcctagggggtgatgatgatgtccat |
272 |
Q |
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| T |
40280446 |
tgttaatggcgtgtattcaaatggtggaggcctagggggtgatgatggtgtccat |
40280500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 24 - 264
Target Start/End: Complemental strand, 40458104 - 40457858
Alignment:
| Q |
24 |
ggtagaatacgttgacgtcgtcccagcaccttattggtaggaggagaaagatcttgttcttg------atgatagtggaatggtaatttgggaattaggg |
117 |
Q |
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| T |
40458104 |
ggtagaatacgttgacgtcgtcccagcaccttattggtaggaggagaaagatcttgttcttgttcttgatgatagtggaatggtaatttgggaattaggg |
40458005 |
T |
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| Q |
118 |
caagattattagggttagagtcaaaattaggaggacgaggaagagaagtgatgagttcggaatagaagaatgtttgaggatcaatagggcgtgtgggggg |
217 |
Q |
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| T |
40458004 |
caagattattagggttagagtcaaaattaggaggacgaggaagagaagtgatgagttcggaatagaagaatgtttgaggatcaatagggcgtgtggaggg |
40457905 |
T |
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| Q |
218 |
tgttaatggcgtgtattcaaatggtggaggcctagggggtgatgatg |
264 |
Q |
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| T |
40457904 |
tgttaatggcgtgtattcaaatggtggaggtctagggggtgatgatg |
40457858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 103 - 242
Target Start/End: Original strand, 40285310 - 40285452
Alignment:
| Q |
103 |
atttgggaattagggcaagattattagggttagagtcaaaattaggaggacgaggaagagaagtgatgagttcggaatagaagaatgtttgaggatcaat |
202 |
Q |
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| T |
40285310 |
atttggggattagggcaagattatcaaggtcagagtcaaaattaggaggatgaggaagattggttatgagttcggaatagaagaatgtctgtggatcaat |
40285409 |
T |
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| Q |
203 |
aggg---cgtgtggggggtgttaatggcgtgtattcaaatggt |
242 |
Q |
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| T |
40285410 |
agggagacgcgtgcggggtgttgatggtgtgtattcagatggt |
40285452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 40280807 - 40280856
Alignment:
| Q |
218 |
tgttaatggcgtgtattcaaatggtggaggcctagggggtgatgatgatg |
267 |
Q |
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| T |
40280807 |
tgttaatggtgtgtattcagatggtggaggcctaggtggcgatgatgatg |
40280856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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