View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18339_low_53 (Length: 252)
Name: NF18339_low_53
Description: NF18339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18339_low_53 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 252
Target Start/End: Complemental strand, 32669732 - 32669487
Alignment:
| Q |
13 |
aagaaaatgcaaggaacatctccagctaatccggaatgaaacagacgaggattttaagatacaatcacgatgacaccgtttacaaaaagtttaaattgat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||| ||||||||| |
|
|
| T |
32669732 |
aagaaaatgcaaggaacatctccagctaatccggaatgaaacagacgaggattttaagatacaaccacgatggcactgtttacaaaaagtctaaattgat |
32669633 |
T |
|
| Q |
113 |
acggacttcacccacctaataaattcattgatagtcaacaattctgtttatctcataacaacatgatgataaaatcatgaggaagattctctatca-gct |
211 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
32669632 |
acggacttcacccacgtaataaattcattgatagtcaacaattctgtatatctcataacaacatgatgataaaattatgaggaagattctctatcacgct |
32669533 |
T |
|
| Q |
212 |
agcc-----attatgtagctacgaattatgttcactaacttgccta |
252 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
32669532 |
agcctttctattatgtagctacgaattatgctcactaacttgccta |
32669487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 10 - 152
Target Start/End: Complemental strand, 23263104 - 23262962
Alignment:
| Q |
10 |
tcgaagaaaatgcaaggaacatctccagctaatccggaatgaaacagacgaggattttaagatacaatcacgatgacaccgtttacaaaaagtttaaatt |
109 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||| ||| |||| |||||||||||| |||||||| |||||||| ||| ||| |||||||||||||| |
|
|
| T |
23263104 |
tcgaagaaaatgcaaggaacatcttcaactaatccaaaataaaacggacgaggattttgagatacaaccacgatgataccttttgcaaaaagtttaaatg |
23263005 |
T |
|
| Q |
110 |
gatacggacttcacccacctaataaattcattgatagtcaaca |
152 |
Q |
| |
|
||||| |||||||||||||||||||||||| || |||||||| |
|
|
| T |
23263004 |
gatacacacttcacccacctaataaattcatcgagagtcaaca |
23262962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University