View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18339_low_55 (Length: 249)

Name: NF18339_low_55
Description: NF18339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18339_low_55
NF18339_low_55
[»] chr3 (2 HSPs)
chr3 (16-82)||(50247709-50247775)
chr3 (32-68)||(50247637-50247673)
[»] chr8 (2 HSPs)
chr8 (154-220)||(21546021-21546088)
chr8 (33-105)||(7498691-7498763)
[»] chr4 (1 HSPs)
chr4 (157-207)||(46885285-46885336)


Alignment Details
Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 50247775 - 50247709
Alignment:
Q  16 gtaatgtttgtcggcctcaagtcaataaagtataatgtctattgactatataaaacatccttcacac 82  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  50247775 gtaatgtttgtcggcctcaagtcaataaagtataatgtctagtgactatataaaacatcctacacac 50247709  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 50247637 - 50247673
Alignment:
Q  32 tcaagtcaataaagtataatgtctattgactatataa 68  Q
    ||||||||||||||||||||||||| |||||||||||    
T  50247637 tcaagtcaataaagtataatgtctagtgactatataa 50247673  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 220
Target Start/End: Original strand, 21546021 - 21546088
Alignment:
Q  154 aatattcatttaatcatgttctaatcaacc-aaaaataacacccatacttatttgtggctgcttctcc 220  Q
    |||||||||||||||||||| ||||||||| |||||||  || ||||| ||||||||||| |||||||    
T  21546021 aatattcatttaatcatgttataatcaaccaaaaaatagtactcatacatatttgtggctacttctcc 21546088  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 105
Target Start/End: Complemental strand, 7498763 - 7498691
Alignment:
Q  33 caagtcaataaagtataatgtctattgactatataaaacatccttcacacgaagcaaaattaaaataagcctc 105  Q
    ||||||||||||| |||| |||||||| || ||||||||||||| |||||  || |||||  |||||||||||    
T  7498763 caagtcaataaagcataaggtctattggctttataaaacatcctacacacatagtaaaatctaaataagcctc 7498691  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 207
Target Start/End: Complemental strand, 46885336 - 46885285
Alignment:
Q  157 attcatttaatcatgttctaatcaacca-aaaataacacccatacttatttg 207  Q
    ||||||||||||||||| |||||||||| ||||||| |||||||||||||||    
T  46885336 attcatttaatcatgttataatcaaccaaaaaataatacccatacttatttg 46885285  T

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