View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18339_low_60 (Length: 234)

Name: NF18339_low_60
Description: NF18339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18339_low_60
NF18339_low_60
[»] chr2 (6 HSPs)
chr2 (1-219)||(16662150-16662368)
chr2 (13-97)||(14703212-14703296)
chr2 (19-219)||(16657675-16657875)
chr2 (37-97)||(12234517-12234577)
chr2 (37-155)||(12258803-12258921)
chr2 (45-97)||(7542062-7542114)
[»] chr7 (12 HSPs)
chr7 (34-219)||(8616506-8616691)
chr7 (37-219)||(8585864-8586046)
chr7 (42-107)||(17260074-17260139)
chr7 (13-113)||(6789316-6789416)
chr7 (37-216)||(8659191-8659370)
chr7 (42-107)||(17267772-17267837)
chr7 (37-107)||(27831145-27831215)
chr7 (20-123)||(10494628-10494731)
chr7 (20-123)||(13333710-13333813)
chr7 (176-216)||(8576293-8576333)
chr7 (35-113)||(3147090-3147168)
chr7 (169-218)||(17267899-17267948)
[»] chr4 (1 HSPs)
chr4 (37-211)||(30775080-30775254)
[»] chr8 (1 HSPs)
chr8 (37-162)||(43744644-43744769)
[»] chr1 (3 HSPs)
chr1 (37-97)||(52549292-52549352)
chr1 (37-126)||(15594862-15594951)
chr1 (19-105)||(4678829-4678915)
[»] chr5 (1 HSPs)
chr5 (41-127)||(28219750-28219836)


Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 16662368 - 16662150
Alignment:
Q  1 atgtacaccccccttgtccatctttgaatccacaaaacaactctcaacaatcttcatacactcgttaaaaaggtccatattgatttcttcaaacttgaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  16662368 atgtacaccccccttgtccatctttgaatccacaaaacaactctcaacaatcttcatacactcgttaaaaaggcccatattgatttcttcaaacttgaca 16662269  T
Q  101 cgagtgagtgatgtagagaagtcaatgtcctcgtataaataatcaatctcaatagcggtgaccaatttgaaagagagtgtccttttcgccttttcacaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16662268 cgagtgagtgatgtagagaagtcaatgtcctcgtataaataatcaatctcaatagcggtgaccaatttgaaagagagtgtccttttcgccttttcacaag 16662169  T
Q  201 aagttctcaacctcctcaa 219  Q
    |||||||||||||||||||    
T  16662168 aagttctcaacctcctcaa 16662150  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 14703212 - 14703296
Alignment:
Q  13 cttgtccatctttgaatccacaaaacaactctcaacaatcttcatacactcgttaaaaaggtccatattgatttcttcaaacttg 97  Q
    |||||||||||| | ||| | || |||||||||||||||||||| |||||| ||||||| ||||||||| |||||||||||||||    
T  14703212 cttgtccatcttagcatcaataagacaactctcaacaatcttcacacactcattaaaaaagtccatattcatttcttcaaacttg 14703296  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 16657875 - 16657675
Alignment:
Q  19 catctttgaatccacaaaacaactctcaacaatcttcatacactcgttaaaaaggtccatattgatttcttcaaacttgacacgagtgagtgatgtagag 118  Q
    ||||||||||||   || |||| |||||||| | ||||||||||| || ||||| |||||||| ||||| ||||||||| |||| |||| ||||| |||     
T  16657875 catctttgaatcacgaagacaattctcaacagttttcatacactcattgaaaagatccatattaatttcctcaaacttggcacgggtgattgatgaagaa 16657776  T
Q  119 aagtcaatgtcctcgtataaataatcaatctcaatagcggtgaccaatttgaaagagagtgtccttttcgccttttcacaagaagttctcaacctcctca 218  Q
    ||||||||  |||   ||||| |||| | ||||| || |||||| ||    |||||||||||||| || ||| | ||||| | |||||||||||||||||    
T  16657775 aagtcaattccctgaaataaagaatctacctcaacagtggtgacaaaagcaaaagagagtgtcctctttgccctctcacatgcagttctcaacctcctca 16657676  T
Q  219 a 219  Q
    |    
T  16657675 a 16657675  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 97
Target Start/End: Original strand, 12234517 - 12234577
Alignment:
Q  37 acaactctcaacaatcttcatacactcgttaaaaaggtccatattgatttcttcaaacttg 97  Q
    |||||||||||||||||||||||||||  ||| ||| |||||||| ||||| |||||||||    
T  12234517 acaactctcaacaatcttcatacactcaataagaagatccatattcatttcctcaaacttg 12234577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 155
Target Start/End: Complemental strand, 12258921 - 12258803
Alignment:
Q  37 acaactctcaacaatcttcatacactcgttaaaaaggtccatattgatttcttcaaacttgacacgagtgagtgatgtagagaagtcaatgtcctcgtat 136  Q
    ||||||||||||| ||||||| || || || ||||| |||| ||| ||||| ||||||||| ||||| ||| ||||| ||| || |||||| | ||  ||    
T  12258921 acaactctcaacagtcttcatgcattcattgaaaagttccaaatttatttcctcaaacttggcacgattgattgatgcagaaaaatcaatgccatcacat 12258822  T
Q  137 aaataatcaatctcaatag 155  Q
    ||| |||| ||||||||||    
T  12258821 aaagaatctatctcaatag 12258803  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 7542062 - 7542114
Alignment:
Q  45 caacaatcttcatacactcgttaaaaaggtccatattgatttcttcaaacttg 97  Q
    |||||||| ||||||||||||||||||| |||||||| || || |||||||||    
T  7542062 caacaatcgtcatacactcgttaaaaagatccatattcatctcctcaaacttg 7542114  T

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Target: chr7 (Bit Score: 94; Significance: 5e-46; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 34 - 219
Target Start/End: Original strand, 8616506 - 8616691
Alignment:
Q  34 aaaacaactctcaacaatcttcatacactcgttaaaaaggtccatattgatttcttcaaacttgacacgagtgagtgatgtagagaagtcaatgtcctcg 133  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||| |||||| || ||| ||||     
T  8616506 aaaacaactctcaacagtctttatacactcgttaaaaaggtccatattgatttcctcaaacttaacacgagtgattgatgaagagaaatcgatgccctca 8616605  T
Q  134 tataaataatcaatctcaatagcggtgaccaatttgaaagagagtgtccttttcgccttttcacaagaagttctcaacctcctcaa 219  Q
     |||||||||||||||||||||  |||||||||||||| || ||  ||| |||||||||||| || | |||| |||||| ||||||    
T  8616606 cataaataatcaatctcaatagtagtgaccaatttgaatgaaagcatccgtttcgccttttcgcatgcagttttcaaccgcctcaa 8616691  T

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Target: chr7; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 37 - 219
Target Start/End: Complemental strand, 8586046 - 8585864
Alignment:
Q  37 acaactctcaacaatcttcatacactcgttaaaaaggtccatattgatttcttcaaacttgacacgagtgagtgatgtagagaagtcaatgtcctcgtat 136  Q
    ||||||||||||| | || |||||||| ||||||||||||||||||||||| |||||||||||||| |||| ||||| |||||| || | | ||||  ||    
T  8586046 acaactctcaacagtatttatacactcattaaaaaggtccatattgatttcctcaaacttgacacgcgtgattgatgaagagaaatcgacgccctcacat 8585947  T
Q  137 aaataatcaatctcaatagcggtgaccaatttgaaagagagtgtccttttcgccttttcacaagaagttctcaacctcctcaa 219  Q
    ||||||||||| |||||||  ||||||||||||||||| ||||||||||| ||||||||||| |  ||||| |||| ||||||    
T  8585946 aaataatcaatttcaatagtagtgaccaatttgaaagaaagtgtcctttttgccttttcacatgccgttcttaaccgcctcaa 8585864  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 107
Target Start/End: Original strand, 17260074 - 17260139
Alignment:
Q  42 tctcaacaatcttcatacactcgttaaaaaggtccatattgatttcttcaaacttgacacgagtga 107  Q
    |||||||||||| ||| ||||| | ||||||||||||||||||||||||||||||| |||||||||    
T  17260074 tctcaacaatctccatgcactcataaaaaaggtccatattgatttcttcaaacttggcacgagtga 17260139  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 113
Target Start/End: Original strand, 6789316 - 6789416
Alignment:
Q  13 cttgtccatctttgaatccacaaaacaactctcaacaatcttcatacactcgttaaaaaggtccatattgatttcttcaaacttgacacgagtgagtgat 112  Q
    |||||||||||| |  || |||| ||||||||||||  ||||||||||||| |||||||  |||||||||||||| ||||||||| | ||||| ||||||    
T  6789316 cttgtccatcttagcgtcaacaagacaactctcaacggtcttcatacactcattaaaaatatccatattgatttcctcaaacttggcccgagtaagtgat 6789415  T
Q  113 g 113  Q
    |    
T  6789416 g 6789416  T

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Target: chr7; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 37 - 216
Target Start/End: Original strand, 8659191 - 8659370
Alignment:
Q  37 acaactctcaacaatcttcatacactcgttaaaaaggtccatattgatttcttcaaacttgacacgagtgagtgatgtagagaagtcaatgtcctcgtat 136  Q
    ||||||||||||| | ||||||||||| |||||||| |||||||| ||||| |||||| || ||||||||| | ||| | ||||||| ||  |||   ||    
T  8659191 acaactctcaacagttttcatacactcattaaaaagatccatattcatttcctcaaacctggcacgagtgattaatgaacagaagtctattccctgaaat 8659290  T
Q  137 aaataatcaatctcaatagcggtgaccaatttgaaagagagtgtccttttcgccttttcacaagaagttctcaacctcct 216  Q
    ||| |||| | ||||| || |||||| ||    |||||||||||||| || ||| | ||||| | |||||||||||||||    
T  8659291 aaagaatcgacctcaacagtggtgacaaaagcaaaagagagtgtcctctttgccctctcacaggcagttctcaacctcct 8659370  T

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Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 42 - 107
Target Start/End: Original strand, 17267772 - 17267837
Alignment:
Q  42 tctcaacaatcttcatacactcgttaaaaaggtccatattgatttcttcaaacttgacacgagtga 107  Q
    |||||||||||| ||| ||||| | ||||||||||||||||||||| ||||||||| |||||||||    
T  17267772 tctcaacaatctccatgcactcatcaaaaaggtccatattgatttcctcaaacttggcacgagtga 17267837  T

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Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 27831215 - 27831145
Alignment:
Q  37 acaactctcaacaatcttcatacactcgttaaaaaggtccatattgatttcttcaaacttgacacgagtga 107  Q
    ||||||||||||| ||| |||||| || || |||||||||||||||||||| ||||||||  |||||||||    
T  27831215 acaactctcaacagtctccatacattcattgaaaaggtccatattgatttcctcaaactttgcacgagtga 27831145  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 10494731 - 10494628
Alignment:
Q  20 atctttgaatccacaaaacaactctcaacaatcttcatacactcgttaaaaaggtccatattgatttcttcaaacttgacacgagtgagtgatgtagaga 119  Q
    ||||||||||||   | |||||| |||||||| |||||||||||| | |||| ||| ||||| ||||| ||||| ||| ||||||||| ||||| ||| |    
T  10494731 atctttgaatccctgagacaactgtcaacaatattcatacactcgatgaaaaagtctatattaatttcctcaaatttggcacgagtgattgatgaagaaa 10494632  T
Q  120 agtc 123  Q
    ||||    
T  10494631 agtc 10494628  T

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Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 13333813 - 13333710
Alignment:
Q  20 atctttgaatccacaaaacaactctcaacaatcttcatacactcgttaaaaaggtccatattgatttcttcaaacttgacacgagtgagtgatgtagaga 119  Q
    ||||||||||||   | |||||| |||||||| |||||||||||| | |||| ||| ||||| ||||| ||||| ||| ||||||||| ||||| ||| |    
T  13333813 atctttgaatccctgagacaactgtcaacaatattcatacactcgatgaaaaagtctatattaatttcctcaaatttggcacgagtgattgatgaagaaa 13333714  T
Q  120 agtc 123  Q
    ||||    
T  13333713 agtc 13333710  T

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Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 8576293 - 8576333
Alignment:
Q  176 agtgtccttttcgccttttcacaagaagttctcaacctcct 216  Q
    ||||||||||| ||||||||||||| |||||||||||||||    
T  8576293 agtgtcctttttgccttttcacaagcagttctcaacctcct 8576333  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 113
Target Start/End: Original strand, 3147090 - 3147168
Alignment:
Q  35 aaacaactctcaacaatcttcatacactcgttaaaaaggtccatattgatttcttcaaacttgacacgagtgagtgatg 113  Q
    |||||||||| |||| | | || ||||||  | ||||| |||||||||||||| ||||||||| ||||||||| |||||    
T  3147090 aaacaactcttaacagtttccaaacactcagtgaaaagatccatattgatttcctcaaacttggcacgagtgattgatg 3147168  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 17267899 - 17267948
Alignment:
Q  169 gaaagagagtgtccttttcgccttttcacaagaagttctcaacctcctca 218  Q
    |||||| ||||||||||| || |||||||| | |||||||||||||||||    
T  17267899 gaaagaaagtgtcctttttgctttttcacatgcagttctcaacctcctca 17267948  T

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Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 37 - 211
Target Start/End: Original strand, 30775080 - 30775254
Alignment:
Q  37 acaactctcaacaatcttcatacactcgttaaaaaggtccatattgatttcttcaaacttgacacgagtgagtgatgtagagaagtcaatgtcctcgtat 136  Q
    ||||||||||||| |||  |||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||| ||| ||||||||||| |   ||    
T  30775080 acaactctcaacagtctgtatacactcattaaaaaggtccatattgatttcctcaaacttgacacgagtgattgatgaagaaaagtcaatgtcttgaaat 30775179  T
Q  137 aaataatcaatctcaatagcggtgaccaatttgaaagagagtgtccttttcgccttttcacaagaagttctcaac 211  Q
    |||| ||| ||||||| |   ||||  || ||||| |||||||||||||| ||||||||||| | ||||||||||    
T  30775180 aaattatctatctcaacaaatgtgagaaacttgaaggagagtgtcctttttgccttttcacatgcagttctcaac 30775254  T

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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 162
Target Start/End: Original strand, 43744644 - 43744769
Alignment:
Q  37 acaactctcaacaatcttcatacactcgttaaaaaggtccatattgatttcttcaaacttgacacgagtgagtgatgtagagaagtcaatgtcctcgtat 136  Q
    ||||||||||||||| |||| ||||||||| || || |||||||||||||| ||||||||   |||||||| || |||| |||| |||||| ||||  ||    
T  43744644 acaactctcaacaattttcaaacactcgttgaagagatccatattgatttcctcaaacttagtacgagtgattgttgtaaagaaatcaatgccctcaaat 43744743  T
Q  137 aaataatcaatctcaatagcggtgac 162  Q
    ||| |||| | |||||||| ||||||    
T  43744744 aaagaatctacctcaatagtggtgac 43744769  T

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Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 37 - 97
Target Start/End: Complemental strand, 52549352 - 52549292
Alignment:
Q  37 acaactctcaacaatcttcatacactcgttaaaaaggtccatattgatttcttcaaacttg 97  Q
    |||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||||||    
T  52549352 acaactttcaacaatcttcatacactccttaaaaaggtccatattcatttcctcaaacttg 52549292  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 37 - 126
Target Start/End: Original strand, 15594862 - 15594951
Alignment:
Q  37 acaactctcaacaatcttcatacactcgttaaaaaggtccatattgatttcttcaaacttgacacgagtgagtgatgtagagaagtcaat 126  Q
    |||||||||||| ||||||||||| || ||||||| |||||| ||||||||||||||||||  |||||| |  |||| | ||||||||||    
T  15594862 acaactctcaactatcttcatacaatccttaaaaaagtccatgttgatttcttcaaacttggaacgagtaaccgatgaaaagaagtcaat 15594951  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 4678915 - 4678829
Alignment:
Q  19 catctttgaatccacaaaacaactctcaacaatcttcatacactcgttaaaaaggtccatattgatttcttcaaacttgacacgagt 105  Q
    ||||||||||||   || |||||||| |||| | | |||||||||||| |||||||||||||| ||||| ||||||||| |||||||    
T  4678915 catctttgaatcactaagacaactcttaacagtttccatacactcgttgaaaaggtccatattaatttcctcaaacttggcacgagt 4678829  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 127
Target Start/End: Original strand, 28219750 - 28219836
Alignment:
Q  41 ctctcaacaatcttcatacactcgttaaaaaggtccatattgatttcttcaaacttgacacgagtgagtgatgtagagaagtcaatg 127  Q
    ||||||||| | |||| |||||| || ||||| |||||||||||||| ||||||||  ||||||| | ||||| | |||| ||||||    
T  28219750 ctctcaacagttttcaaacactcattgaaaagatccatattgatttcctcaaacttagcacgagtaattgatgaaaagaaatcaatg 28219836  T

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