View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18339_low_9 (Length: 616)

Name: NF18339_low_9
Description: NF18339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18339_low_9
NF18339_low_9
[»] chr5 (4 HSPs)
chr5 (241-594)||(28385171-28385524)
chr5 (245-594)||(12540522-12540871)
chr5 (12-196)||(28385569-28385753)
chr5 (12-196)||(12540920-12541104)
[»] chr7 (2 HSPs)
chr7 (245-594)||(3417520-3417869)
chr7 (21-193)||(3417296-3417468)
[»] chr2 (6 HSPs)
chr2 (247-594)||(13448200-13448547)
chr2 (245-575)||(13440056-13440386)
chr2 (245-591)||(13454674-13455020)
chr2 (12-196)||(13440435-13440619)
chr2 (14-196)||(13448598-13448780)
chr2 (46-194)||(13455071-13455219)
[»] chr4 (8 HSPs)
chr4 (245-593)||(48957982-48958333)
chr4 (250-593)||(48965167-48965510)
chr4 (81-196)||(48958382-48958497)
chr4 (81-196)||(48912171-48912286)
chr4 (117-191)||(48974349-48974423)
chr4 (537-593)||(48967296-48967352)
chr4 (245-371)||(48961353-48961482)
chr4 (127-173)||(48965587-48965633)
[»] chr6 (3 HSPs)
chr6 (12-194)||(12589926-12590108)
chr6 (13-196)||(12483222-12483405)
chr6 (245-341)||(12483454-12483556)
[»] scaffold0536 (2 HSPs)
scaffold0536 (81-196)||(6337-6452)
scaffold0536 (507-593)||(6766-6852)
[»] chr8 (2 HSPs)
chr8 (119-196)||(12641345-12641422)
chr8 (547-591)||(12641776-12641820)


Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 241 - 594
Target Start/End: Complemental strand, 28385524 - 28385171
Alignment:
Q  241 tggctgccgaagggatttgaggagagaaacattggaaagaagggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggtgg 340  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28385524 tggctgccaaagggatttgaggagagaaacattggaaagaagggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggtgg 28385425  T
Q  341 ggggatttctgacacattgcggggggaactcaattgtagaagctgttggcgcgggagttccaatgataacgtggccttgtcatgcagatcacttcagcaa 440  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28385424 ggggatttctgacacattgcggagggaactcaattgtagaggctgttggcgcgggagttccaatgataacgtggccttgtcatgcagatcacttcagcaa 28385325  T
Q  441 tgagaaattgataacaacagtccgaagaattggagtggaagtaggtgttacggaatggtgtacaaatggtaatggggagagaaagaagttggtgaccaga 540  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28385324 tgagaaattgataacaacagtccgaagaattggagtggaagtaggtgtaacggaatggtgtacaaatggtaatggggagagaaagaagttggtgagcaga 28385225  T
Q  541 gataacatagagaaggctatgaggagattgatggacggtggcgatgaagctgaa 594  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28385224 gataacatagagaaggctatgaggaaattgatggacggtggcgatgaagctgaa 28385171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 245 - 594
Target Start/End: Complemental strand, 12540871 - 12540522
Alignment:
Q  245 tgccgaagggatttgaggagagaaacattggaaagaagggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggtgggggg 344  Q
    |||||||||||||||||||||||||||||||||| |||||||| || || ||||||||||||||||| |||  |||||||||| ||||||||||||||||    
T  12540871 tgccgaagggatttgaggagagaaacattggaaaaaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtgggggg 12540772  T
Q  345 atttctgacacattgcggggggaactcaattgtagaagctgttggcgcgggagttccaatgataacgtggccttgtcatgcagatcacttcagcaatgag 444  Q
    |||| |||||||||| ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||| |||||||||   ||| |||    
T  12540771 atttatgacacattgtgggggaaactcaattgtagaggctgttggtgcgggagttccaatgataacgtggccgtgtcatggagatcacttattcaacgag 12540672  T
Q  445 aaattgataacaacagtccgaagaattggagtggaagtaggtgttacggaatggtgtacaaatggtaatggggagagaaagaagttggtgaccagagata 544  Q
    ||| | ||||||   |||||| |||||||||| ||||||||||  || |||||||||||||||||||||||||||||||||||||||||   |||||||     
T  12540671 aaactaataacacaggtccgaggaattggagtagaagtaggtgcaacagaatggtgtacaaatggtaatggggagagaaagaagttggttggcagagatg 12540572  T
Q  545 acatagagaaggctatgaggagattgatggacggtggcgatgaagctgaa 594  Q
     |||||||||||||||||||||||||||||| |||||  |||||||||||    
T  12540571 gcatagagaaggctatgaggagattgatggatggtggttatgaagctgaa 12540522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 12 - 196
Target Start/End: Complemental strand, 28385753 - 28385569
Alignment:
Q  12 agcagagaagggaaacgagagtgatgtgagcgagcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacgtatgttttggaagc 111  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28385753 agcagagaagggaaacaagagtgatgtgagcgagcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacatatgttttggaagc 28385654  T
Q  112 ataaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttcctg 196  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  28385653 ataaaccatttctctgataaacaactatatgagattgcatgcgcagtagaagcatcaggtcacccattcatatgggttgttcctg 28385569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 12 - 196
Target Start/End: Complemental strand, 12541104 - 12540920
Alignment:
Q  12 agcagagaagggaaacgagagtgatgtgagcgagcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacgtatgttttggaagc 111  Q
    ||||| || |||||| ||| ||| || |||||||||||||| ||| | ||||||||| ||||||| |||||||||||| |||||| ||||||||||||||    
T  12541104 agcagggaggggaaatgagggtgctgcgagcgagcacgagtcccttagctggctcaactcacagcaagttaactcagtggtgtacatatgttttggaagc 12541005  T
Q  112 ataaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttcctg 196  Q
    ||||| ||||||| ||| |||||||||||||||||||| || ||| |||||| |   ||||||||||||||||||||||||||||    
T  12541004 ataaatcatttctttgacaaacaactatatgagattgcatgtgcagtagaaggaatgggtcacccattcatatgggttgttcctg 12540920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 245 - 594
Target Start/End: Original strand, 3417520 - 3417869
Alignment:
Q  245 tgccgaagggatttgaggagagaaacattggaaagaagggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggtgggggg 344  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||  | ||||||||||||||||| |||| |||||||||| |||||||||| |||||    
T  3417520 tgccgaagggatttgaggagagaaacattggaaagaagggtttgatcgttaggggttgggccccacaggttcagatattgagccaccctgcggtaggggg 3417619  T
Q  345 atttctgacacattgcggggggaactcaattgtagaagctgttggcgcgggagttccaatgataacgtggccttgtcatgcagatcacttcagcaatgag 444  Q
    |||| |||||||||| |||||||||||| |||| || |||||||| || |||||||||||||||||||||||  |||||| |||||| ||   |||||||    
T  3417620 atttatgacacattgtggggggaactcatttgttgaggctgttggtgcaggagttccaatgataacgtggccgggtcatggagatcaattgttcaatgag 3417719  T
Q  445 aaattgataacaacagtccgaagaattggagtggaagtaggtgttacggaatggtgtacaaatggtaatggggagagaaagaagttggtgaccagagata 544  Q
    ||| | ||||||  ||||||| |||||||||||||||||||||  || |||||| || || |||||| ||||||||||||||||||||||| |||||||     
T  3417720 aaactaataacacaagtccgaggaattggagtggaagtaggtgcaacagaatggcgtgcacatggtattggggagagaaagaagttggtgagcagagatg 3417819  T
Q  545 acatagagaaggctatgaggagattgatggacggtggcgatgaagctgaa 594  Q
    ||||||||||||| |||||||||||||||||| || | ||||| ||||||    
T  3417820 acatagagaaggcaatgaggagattgatggacagtagtgatgaggctgaa 3417869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 21 - 193
Target Start/End: Original strand, 3417296 - 3417468
Alignment:
Q  21 gggaaacgagagtgatgtgagcgagcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacgtatgttttggaagcataaaccat 120  Q
    |||||||||| ||| || ||| ||||| |||||||||   |||||||| ||||| | ||||||||||||  ||||| |||||||||||||| ||||| ||    
T  3417296 gggaaacgagggtgctgagagtgagcatgagtgcctgcgttggctcaactcacaacaagttaactcagtgttgtacatatgttttggaagcttaaactat 3417395  T
Q  121 ttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttc 193  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||    
T  3417396 ttctctgataaacaactatatgagattgcatacgcaatagaagcatcgggtcacccattcatatgggttgttc 3417468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 156; Significance: 1e-82; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 247 - 594
Target Start/End: Complemental strand, 13448547 - 13448200
Alignment:
Q  247 ccgaagggatttgaggagagaaacattggaaagaagggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggtggggggat 346  Q
    |||||||||||||| |||||||| || || ||||||||||| || || ||||||||||||||||| |||  |||||||||| ||||||| ||||||||||    
T  13448547 ccgaagggatttgaagagagaaatatcgggaagaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcagtggggggat 13448448  T
Q  347 ttctgacacattgcggggggaactcaattgtagaagctgttggcgcgggagttccaatgataacgtggccttgtcatgcagatcacttcagcaatgagaa 446  Q
    || |||| |||||||||||||||||||  ||||| |||||| | ||||||||||||||||||||||||||   ||||| |||||| |||  |||||||||    
T  13448447 ttatgacgcattgcggggggaactcaaccgtagaggctgttagtgcgggagttccaatgataacgtggccggttcatggagatcaattctacaatgagaa 13448348  T
Q  447 attgataacaacagtccgaagaattggagtggaagtaggtgttacggaatggtgtacaaatggtaatggggagagaaagaagttggtgaccagagataac 546  Q
    | ||||||||  | ||||| |||||||||| ||||| ||||  || ||||||||||| | ||||   | ||||||||||||||| |||| |||||||| |    
T  13448347 actgataacacaattccgaggaattggagttgaagtcggtgcaacagaatggtgtacgagtggtgtcgcggagagaaagaagttagtgagcagagatagc 13448248  T
Q  547 atagagaaggctatgaggagattgatggacggtggcgatgaagctgaa 594  Q
    |||||||||||| | |||||||||||||||||||| ||||||||||||    
T  13448247 atagagaaggctgtaaggagattgatggacggtggtgatgaagctgaa 13448200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 245 - 575
Target Start/End: Complemental strand, 13440386 - 13440056
Alignment:
Q  245 tgccgaagggatttgaggagagaaacattggaaagaagggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggtgggggg 344  Q
    |||| |||||||| || |||||||||||| | | || |||||| || || | |||||||||||||||||||  |||||||||| ||||||||||||||||    
T  13440386 tgccaaagggattcgaagagagaaacattaggaggatgggtttgatcattaagggttgggccccacaagttaagatattgagccaccctgcggtgggggg 13440287  T
Q  345 atttctgacacattgcggggggaactcaattgtagaagctgttggcgcgggagttccaatgataacgtggccttgtcatgcagatcacttcagcaatgag 444  Q
    |||| |||| ||||||||||||||||||||||||||  ||||| | ||||||||||||||||||||||||||   ||||| |||||| |||  ||| |||    
T  13440286 atttatgacgcattgcggggggaactcaattgtagagtctgttagtgcgggagttccaatgataacgtggccggttcatggagatcaattctacaacgag 13440187  T
Q  445 aaattgataacaacagtccgaagaattggagtggaagtaggtgttacggaatggtgtacaaatggtaatggggagagaaagaagttggtgaccagagata 544  Q
    ||| || |||||  | | ||| |||||||||||||||| ||||  |||||||||||||  ||||||  || ||||||| |||||||||||| ||| ||||    
T  13440186 aaactggtaacacaatttcgaggaattggagtggaagtcggtgcaacggaatggtgtaagaatggtgttgcggagagagagaagttggtgagcagggata 13440087  T
Q  545 acatagagaaggctatgaggagattgatgga 575  Q
    |||||||||||||| ||||||||||||||||    
T  13440086 acatagagaaggctgtgaggagattgatgga 13440056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 245 - 591
Target Start/End: Complemental strand, 13455020 - 13454674
Alignment:
Q  245 tgccgaagggatttgaggagagaaacattggaaagaagggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggtgggggg 344  Q
    |||||||||||||||| |||| |||||| |  || |||||||| || || |||||||||||||||||||||  |||||||||  ||||||| ||||||||    
T  13455020 tgccgaagggatttgaagagaaaaacatcgagaaaaagggtttgatcattaggggttgggccccacaagttaagatattgagtcaccctgcagtgggggg 13454921  T
Q  345 atttctgacacattgcggggggaactcaattgtagaagctgttggcgcgggagttccaatgataacgtggccttgtcatgcagatcacttcagcaatgag 444  Q
    |||| |||| |||||||||||||||||||| ||||| |||||| ||  ||||||||||||||||||||||||    |||| |||||| |||  ||| |||    
T  13454920 atttatgacgcattgcggggggaactcaatcgtagaggctgttagcatgggagttccaatgataacgtggccagtccatggagatcaattctacaacgag 13454821  T
Q  445 aaattgataacaacagtccgaagaattggagtggaagtaggtgttacggaatggtgtacaaatggtaatggggagagaaagaagttggtgaccagagata 544  Q
    ||| | ||||||  ||| ||| |||||||| | ||||| ||||  || ||||||||||||| ||||  || ||||||| |||||||||||| || |||||    
T  13454820 aaactaataacacaagttcgaggaattggaattgaagtcggtgcaacagaatggtgtacaagtggtgttgcggagagagagaagttggtgagcaaagata 13454721  T
Q  545 acatagagaaggctatgaggagattgatggacggtggcgatgaagct 591  Q
     ||||||||||||| ||||||||||||||| |||||| |||||||||    
T  13454720 gcatagagaaggctgtgaggagattgatgggcggtggtgatgaagct 13454674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 12 - 196
Target Start/End: Complemental strand, 13440619 - 13440435
Alignment:
Q  12 agcagagaagggaaacgagagtgatgtgagcgagcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacgtatgttttggaagc 111  Q
    |||||||| |||||| ||| ||||||||| |  |||||| ||| |||  |||||| | ||| ||  ||||||||| ||  ||||| ||||||||||||||    
T  13440619 agcagagaggggaaaggagggtgatgtgaacatgcacgaatgcatgagttggctcgactcagagaaagttaactcggtgttgtacatatgttttggaagc 13440520  T
Q  112 ataaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttcctg 196  Q
    || ||| |||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||    
T  13440519 atcaactatttctctgataaacaactatatgagatggcgtgcgcaatagaagcatctagtcacccattcatatgggttgttcctg 13440435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 14 - 196
Target Start/End: Complemental strand, 13448780 - 13448598
Alignment:
Q  14 cagagaagggaaacgagagtgatgtgagcgagcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacgtatgttttggaagcat 113  Q
    |||||| |||||| ||| ||| |||||  | ||||||| ||||||  |||||| | ||| || |||||||||||||  ||||| ||||||||||||||||    
T  13448780 cagagaggggaaatgagggtgctgtgaatgtgcacgagagcctgagttggctcgattcagagagagttaactcagtgttgtacatatgttttggaagcat 13448681  T
Q  114 aaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttcctg 196  Q
     ||| |||| ||||||||||||||||| ||||| || || || ||||||||||| ||||||||||||||||||||||||||||    
T  13448680 caactatttttctgataaacaactatacgagatggcatgtgcgatagaagcatccggtcacccattcatatgggttgttcctg 13448598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 46 - 194
Target Start/End: Complemental strand, 13455219 - 13455071
Alignment:
Q  46 cacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacgtatgttttggaagcataaaccatttctctgataaacaactatatgaga 145  Q
    ||||||||||||| ||||||  | ||| || |||||||||||||  ||||| |||||||||||||||| ||  |||  ||| ||||||||||||||||||    
T  13455219 cacgagtgcctgagctggcttgactcaaagagagttaactcagtattgtacatatgttttggaagcatcaattattcatctaataaacaactatatgaga 13455120  T
Q  146 ttgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttcc 194  Q
    | || ||| || |||||||| ||||||| || |||||||||||||||||    
T  13455119 tggcatgctcactagaagcagcaggtcaaccgttcatatgggttgttcc 13455071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 1e-33; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 245 - 593
Target Start/End: Complemental strand, 48958333 - 48957982
Alignment:
Q  245 tgccgaagggatttgaggagagaaacattggaaagaag---ggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggtggg 341  Q
    ||||||| ||||| || |||||||||||||||||||||   ||||| || || ||||| ||||||||||||||| ||||  ||||| ||  ||| |||||    
T  48958333 tgccgaaaggattcgaagagagaaacattggaaagaagaaaggtttgatcattagggggtgggccccacaagttttgattctgagccacattgccgtggg 48958234  T
Q  342 gggatttctgacacattgcggggggaactcaattgtagaagctgttggcgcgggagttccaatgataacgtggccttgtcatgcagatcacttcagcaat 441  Q
     | |||| |||||||||||||| ||||||| | ||| || |||||| ||||||| ||||||||||| ||||||||    |||| ||| || |||  ||||    
T  48958233 tgcatttatgacacattgcgggtggaactccactgtggaggctgttagcgcgggggttccaatgatcacgtggccggtgcatggagaacaattctacaat 48958134  T
Q  442 gagaaattgataacaacagtccgaagaattggagtggaagtaggtgttacggaatggtgtacaaatggtaatggggagagaaagaagttggtgaccagag 541  Q
    ||||| |||||||| |  || ||| ||||||| ||||| || ||||  || || ||||||  ||| |||  || ||||| | ||||| | ||||  | ||    
T  48958133 gagaagttgataactaatgtgcgaggaattggggtggaggttggtgcaacagagtggtgtgtaaacggttttgaggagaaacagaagattgtgagtaaag 48958034  T
Q  542 ataacatagagaaggctatgaggagattgatggacggtggcgatgaagctga 593  Q
    |||  ||||| |||||| ||| |||||||||||||||||| |||||||||||    
T  48958033 atagtatagaaaaggctgtgaagagattgatggacggtggtgatgaagctga 48957982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 250 - 593
Target Start/End: Complemental strand, 48965510 - 48965167
Alignment:
Q  250 aagggatttgaggagagaaacattggaaagaagggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggtggggggatttc 349  Q
    |||||||| || |||||||||||||||||||||||||| || || ||||||||||| || || ||||||||  ||||| |||| || ||||| |  |||     
T  48965510 aagggattcgaagagagaaacattggaaagaagggtttgattattaggggttgggctccgcaggttctgattctgagccaccccgctgtgggtgccttta 48965411  T
Q  350 tgacacattgcggggggaactcaattgtagaagctgttggcgcgggagttccaatgataacgtggccttgtcatgcagatcacttcagcaatgagaaatt 449  Q
    |||| ||||| ||  ||||||| |  || || |||||||| ||||| ||||| ||||| || |||||||  |||| ||| || |||  ||| || ||| |    
T  48965410 tgactcattgtggttggaactccacagtggaggctgttggtgcgggggttccgatgattacatggccttcacatggagaacaattctacaacgaaaaact 48965311  T
Q  450 gataacaacagtccgaagaattggagtggaagtaggtgttacggaatggtgtacaaatggtaatggggagagaaagaagttggtgaccagagataacata 549  Q
    |||||||  ||| ||| | |||||||||||||| ||||  || |||||||||   | ||||  ||  || ||| ||||| ||||||  || |||| ||||    
T  48965310 gataacagaagtgcgagggattggagtggaagttggtgcaacagaatggtgtttgactggttttgaagaaagagagaagctggtgagtagtgatagcata 48965211  T
Q  550 gagaaggctatgaggagattgatggacggtggcgatgaagctga 593  Q
    ||||||||| ||||||||||||||||| |||| |||||||||||    
T  48965210 gagaaggctgtgaggagattgatggacagtggtgatgaagctga 48965167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 81 - 196
Target Start/End: Complemental strand, 48958497 - 48958382
Alignment:
Q  81 taactcagttgtgtacgtatgttttggaagcataaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattc 180  Q
    |||||||||  ||||| |||| ||||||||||||    |||| |||||||||||||| |||||||||||||| |  ||||||||||||||||||  |||     
T  48958497 taactcagtgttgtacatatgctttggaagcatatgttatttatctgataaacaactttatgagattgcgtgtgggatagaagcatcaggtcacgaattt 48958398  T
Q  181 atatgggttgttcctg 196  Q
     |||||||||||||||    
T  48958397 gtatgggttgttcctg 48958382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 81 - 196
Target Start/End: Original strand, 48912171 - 48912286
Alignment:
Q  81 taactcagttgtgtacgtatgttttggaagcataaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattc 180  Q
    |||||| || |||||| |||| |||||||||  |   ||||| || ||||||||||| ||||||||||||||||  || ||||||||  |||||  ||||    
T  48912171 taactcggtggtgtacatatgctttggaagccaatgtcatttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattc 48912270  T
Q  181 atatgggttgttcctg 196  Q
    ||||||||||||||||    
T  48912271 atatgggttgttcctg 48912286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 117 - 191
Target Start/End: Complemental strand, 48974423 - 48974349
Alignment:
Q  117 ccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgt 191  Q
    ||||||| || |||| ||| | |||||||||||  |||||||||||||||| ||||||| |||||||||||||||    
T  48974423 ccatttcactaataagcaattgtatgagattgcaagcgcaatagaagcatcgggtcaccaattcatatgggttgt 48974349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 537 - 593
Target Start/End: Complemental strand, 48967352 - 48967296
Alignment:
Q  537 cagagataacatagagaaggctatgaggagattgatggacggtggcgatgaagctga 593  Q
    |||||||||||||||||| ||||| || ||||||||||||  || ||||||||||||    
T  48967352 cagagataacatagagaaagctataagaagattgatggacaatgacgatgaagctga 48967296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 371
Target Start/End: Complemental strand, 48961482 - 48961353
Alignment:
Q  245 tgccgaagggatttgaggagagaaacattgga---aagaagggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggtggg 341  Q
    ||||||| |||||||| ||||||||||||| |   ||||||||||| || || | ||| ||||||||||||||| ||||  || || || | ||||||||    
T  48961482 tgccgaaaggatttgaagagagaaacattgaaaagaagaagggtttgatcattaaggggtgggccccacaagttatgatcctgggccacacagcggtggg 48961383  T
Q  342 gggatttctgacacattgcggggggaactc 371  Q
     |  ||| |||| ||||||||| |||||||    
T  48961382 tgtgtttatgacgcattgcgggtggaactc 48961353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 127 - 173
Target Start/End: Complemental strand, 48965633 - 48965587
Alignment:
Q  127 gataaacaactatatgagattgcgtgcgcaatagaagcatcaggtca 173  Q
    |||||||| || |||||||||||||| |||||||||||||| |||||    
T  48965633 gataaacagctttatgagattgcgtgtgcaatagaagcatcgggtca 48965587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 12 - 194
Target Start/End: Original strand, 12589926 - 12590108
Alignment:
Q  12 agcagagaagggaaacgagagtgatgtgagcgagcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacgtatgttttggaagc 111  Q
    |||||| | |||||| ||||||| ||||| || ||| ||||| ||||  ||||| || ||  |||||| |||||| ||  ||||| |||| ||||| |||    
T  12589926 agcagataggggaaatgagagtgttgtgaacgtgcaagagtgtctgagttggctaaactcgaagcgagataactctgtgttgtacatatgctttgggagc 12590025  T
Q  112 ataaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttcc 194  Q
    |||  | ||||||| ||||||||||| ||||||||| |||| |  |||||||||||||| |||  |||| |||||||| ||||    
T  12590026 atatgctatttctcagataaacaactttatgagatttcgtgtggcatagaagcatcaggccacgaattcgtatgggttattcc 12590108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 12483222 - 12483405
Alignment:
Q  13 gcagagaagggaaacgagagtgatgtgagcgagcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacgtatgttttggaagca 112  Q
    ||||||| |||||||||||||| |||||||| ||| ||||| |  |  ||||| || ||| ||| ||  || |||||  ||||| |||| ||||| |||     
T  12483222 gcagagaggggaaacgagagtgttgtgagcgtgcatgagtgtcaaagttggctaaactcaaagcaagaaaattcagtgttgtacatatgctttgggagcc 12483321  T
Q  113 taaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttcctg 196  Q
    ||  | |||||||||||||||| || || || ||| | |||| |||||||||||| ||| |   ||||||||||||||||||||    
T  12483322 tatgcaatttctctgataaacagctttacgaaatttcatgcggaatagaagcatcgggtaaaaaattcatatgggttgttcctg 12483405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 245 - 341
Target Start/End: Original strand, 12483454 - 12483556
Alignment:
Q  245 tgccgaagggatttgaggagagaaacattgga------aagaagggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggt 338  Q
    ||||||||||||||||||||||||||||| ||      |||| |||||| || |||||||| ||||| ||||| || ||||| |||||| ||||||| ||    
T  12483454 tgccgaagggatttgaggagagaaacattagaaggaataagatgggtttaatcatcagggggtgggcaccacaggtactgattttgagccaccctgcagt 12483553  T
Q  339 ggg 341  Q
    |||    
T  12483554 ggg 12483556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 81 - 196
Target Start/End: Original strand, 6337 - 6452
Alignment:
Q  81 taactcagttgtgtacgtatgttttggaagcataaaccatttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattc 180  Q
    |||||||||  ||||| |||| ||||||||| ||  || |||| | ||||||||||| || |||||||| || |  ||||||||||| ||||||  ||||    
T  6337 taactcagtgttgtacatatgctttggaagcttatgccttttcccggataaacaactttacgagattgcatgtgggatagaagcatcgggtcacaaattc 6436  T
Q  181 atatgggttgttcctg 196  Q
    ||||||||||||||||    
T  6437 atatgggttgttcctg 6452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 593
Target Start/End: Original strand, 6766 - 6852
Alignment:
Q  507 tggtaatggggagagaaagaagttggtgaccagagataacatagagaaggctatgaggagattgatggacggtggcgatgaagctga 593  Q
    ||||| |||||||||| ||||| |||||   || ||||  || ||||||||| |||||||||||||||| ||||| || ||||||||    
T  6766 tggtattggggagagagagaaggtggtggggagggatagtattgagaaggctgtgaggagattgatggatggtggtgacgaagctga 6852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 119 - 196
Target Start/End: Original strand, 12641345 - 12641422
Alignment:
Q  119 atttctctgataaacaactatatgagattgcgtgcgcaatagaagcatcaggtcacccattcatatgggttgttcctg 196  Q
    ||||||||||||||||||| || ||||||||| ||| |||||||   |||||||||  |||  |||||||||||||||    
T  12641345 atttctctgataaacaactttacgagattgcgagcggaatagaaaattcaggtcacgaatttgtatgggttgttcctg 12641422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 547 - 591
Target Start/End: Original strand, 12641776 - 12641820
Alignment:
Q  547 atagagaaggctatgaggagattgatggacggtggcgatgaagct 591  Q
    |||||||| ||| |||||||||||||||||| ||| |||||||||    
T  12641776 atagagaaagctgtgaggagattgatggacgatggtgatgaagct 12641820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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