View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1833_high_12 (Length: 234)
Name: NF1833_high_12
Description: NF1833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1833_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 19768513 - 19768734
Alignment:
| Q |
1 |
attttccctagattgtgtgattatggaaggttaaacctgaaatgagaatggaaattaactctgtttatcttaaggaccatgatatctattggtatgttca |
100 |
Q |
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| T |
19768513 |
attttccctagattgtttgattatggaaggttaaacttgaaatgagaatggcaattaactctgtttatcttaaggaccatgatatctattggtatgttca |
19768612 |
T |
|
| Q |
101 |
attatattatgcagatttcagtttctaacatgttaaaattaagttatatcaattaactcatgtactcatgcctctaaaactatctgcattttttattctt |
200 |
Q |
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| T |
19768613 |
attatattatgcagattttagtttctaacatgttaaaattaagttatatcaattaactcatgtactgatgcctctaaaactatctgcattttttattctt |
19768712 |
T |
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| Q |
201 |
ggcaggttattggaagaaaatg |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
19768713 |
ggcaggttattggaagaaaatg |
19768734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 83 - 161
Target Start/End: Original strand, 29200134 - 29200212
Alignment:
| Q |
83 |
tatctattggtatgttcaattatattatgcagatttcagtttctaacatgttaaaattaagttatatcaattaactcat |
161 |
Q |
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| T |
29200134 |
tatctattggtatgttcaattatattatgcagatttcagtttctaacatgttaaaaataagttatatcaattaactcat |
29200212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 29200027 - 29200074
Alignment:
| Q |
3 |
tttccctagattgtgtgattatggaaggttaaacctgaaatgagaatg |
50 |
Q |
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| T |
29200027 |
tttccctagattgtgtgattatgaaaggttaaacctgaaatgagaatg |
29200074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 37616774 - 37616579
Alignment:
| Q |
1 |
attttccctagattgtgtgattatggaaggttaaacctgaaatgagaatggaaattaactctgtttatcttaaggaccatgatatctattggtatgttca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37616774 |
attttccctagattgtgtgattatggaaggttaaacttgaaatgagaatggcaattaactctgtttatcttaaggaccatgatatctattggtatgttca |
37616675 |
T |
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| Q |
101 |
attatattatgcagatttcagtttctaacatgttaaaattaagttatatcaattaactcatgtactcatgcctctaaaactatctgcattttttat |
196 |
Q |
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| T |
37616674 |
attatattatgcagatttaagtttctaacatgttaaaattaagttatatcaattaactcatgtactcatgcctctaaaactatctgcattttttat |
37616579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 78 - 149
Target Start/End: Complemental strand, 1659881 - 1659810
Alignment:
| Q |
78 |
catgatatctattggtatgttcaattatattatgcagatttcagtttctaacatgttaaaattaagttatat |
149 |
Q |
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| T |
1659881 |
catgatctctattggtatgttcaattatattatgtagatttcagtttctaacatgttaaaatcaagttatat |
1659810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 78 - 149
Target Start/End: Complemental strand, 32226158 - 32226087
Alignment:
| Q |
78 |
catgatatctattggtatgttcaattatattatgcagatttcagtttctaacatgttaaaattaagttatat |
149 |
Q |
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| T |
32226158 |
catgatctctattggtatgttcaattatattatgtagatttcagtttctaacatgttaaaatcaagttatat |
32226087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 25899469 - 25899421
Alignment:
| Q |
3 |
tttccctagattgtgtgattatggaaggttaaacctgaaatgagaatgg |
51 |
Q |
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||||||||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
25899469 |
tttccctagattgtgtgattatgaaaggttaaacttgaaatgagaatgg |
25899421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 32663203 - 32663253
Alignment:
| Q |
1 |
attttccctagattgtgtgattatggaaggttaaacctgaaatgagaatgg |
51 |
Q |
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||||||||| ||||||||||| | |||||||||| |||||| ||||||||| |
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| T |
32663203 |
attttccctggattgtgtgataaaggaaggttaagcctgaattgagaatgg |
32663253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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