View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1833_high_2 (Length: 478)
Name: NF1833_high_2
Description: NF1833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1833_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 155 - 471
Target Start/End: Original strand, 39359893 - 39360209
Alignment:
| Q |
155 |
taaattttcaacacattatttcctttgaccaatgttgtataaataaacaatacacacgaggatttacgtatccaatcaaaaaagttagcaataatgaatc |
254 |
Q |
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| T |
39359893 |
taaattttcaacacattatttcctttgaccaatgttgtataaataaacaatacacacgaggatttacgtatccaatcaaaaaagttagcaataatgaatc |
39359992 |
T |
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| Q |
255 |
agatgaagtggtgcgaattagaagcaacaagattaaggtgcaaagaacatccaaatgataaacaattaccaggggtttgttcctcttgtttaagagacaa |
354 |
Q |
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| T |
39359993 |
agatgaagtggtgcgaattagaagcaacaagattaaggtgcaaagaacatccaaatgataaacaattaccaggtgtttgttcctcttgtttaagagacaa |
39360092 |
T |
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| Q |
355 |
actctcaaacctatactccaagaaccctattgattctctctactattgttctccttcttctcctgcttctcctcaacctattgacgatgcctcaactaat |
454 |
Q |
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| T |
39360093 |
actctcaaacctatactccaagaaccctgttgattctctctactattgttctccttcttctcctgcttctcctcaacctattgacgatgcctcaactaat |
39360192 |
T |
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| Q |
455 |
catgggtcttcatctca |
471 |
Q |
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| T |
39360193 |
catgggtcttcatctca |
39360209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 39359771 - 39359907
Alignment:
| Q |
1 |
ttttcatatcctgacgggaataataataatccaataatcatttagtttaatgatattaaacgcagcaatattagaaaaacaggaaccttcgaggttgtcg |
100 |
Q |
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| T |
39359771 |
ttttcatatcctgacgggaataataata---caataataatttagtttaatgatattaaacgcagcaatattagaaaaacaggaaccttcgaggttgtcg |
39359867 |
T |
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| Q |
101 |
tactttgtattattgttgcattttataaattttcaacaca |
140 |
Q |
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| T |
39359868 |
tactttgtattattgttgcattttataaattttcaacaca |
39359907 |
T |
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