View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1833_high_5 (Length: 437)
Name: NF1833_high_5
Description: NF1833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1833_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 6e-81; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 20 - 206
Target Start/End: Complemental strand, 54951344 - 54951156
Alignment:
| Q |
20 |
atgagatgaataagaaacggacgaagggcatataaaagtgaga-aaaatatcataatacaaaatcccaacagtt-aatcgatgattcttgtggttagata |
117 |
Q |
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| T |
54951344 |
atgagatgaataagaaacggacgaagggcatataaaagtgagataaaatatcataatacaaaatcccaacagttgaatcgatgattcttgtggttagata |
54951245 |
T |
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| Q |
118 |
gattaataatttattgaactaacttatataagcttatttgatcaaatgaaaagtgtttggtaaacaaacttttcttgttggcttataac |
206 |
Q |
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| T |
54951244 |
gattaataatttattgaactaacttatataagcttgtttgatcaaatgaaaagtgtttgctaaataaacttttcttattagcttataac |
54951156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 273 - 372
Target Start/End: Complemental strand, 54950590 - 54950491
Alignment:
| Q |
273 |
attctttgattgatagtgatacatccattcttttctaaagatgcatatcgtcagttttgggcagaattccatgatcaattcttctcttctctcaatcttg |
372 |
Q |
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| T |
54950590 |
attctttgattgatagtgatacatccattcttttctaaagatgcatgtcgtcagttttgggcagaattccatgatcaattcttctcttctctcaatcttg |
54950491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 349
Target Start/End: Complemental strand, 54944869 - 54944793
Alignment:
| Q |
273 |
attctttgattgatagtgatacatccattcttttctaaagatgcatatcgtcagttttgggcagaattccatgatca |
349 |
Q |
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| T |
54944869 |
attctttgattgatagtgatgaagccactcttttgtaaagatgcatgtcatcgtttttgggcagaattccataatca |
54944793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 46334697 - 46334737
Alignment:
| Q |
144 |
tataagcttatttgatcaaatgaaaagtgtttggtaaacaa |
184 |
Q |
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| T |
46334697 |
tataagcttgtttgatcaaatgagacgtgtttggtaaacaa |
46334737 |
T |
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