View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1833_high_6 (Length: 375)
Name: NF1833_high_6
Description: NF1833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1833_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 51 - 338
Target Start/End: Complemental strand, 51832689 - 51832406
Alignment:
| Q |
51 |
ttataggtatgtttgacgatgccaataacaaataatttataagttcgtcaaataaaaaattatgactacaaccaattttaaaattatacctaataatatt |
150 |
Q |
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| T |
51832689 |
ttatgggtatgtttgacgatgccaataacaaataatttataagttcgtcaaataaaaaattatgactacaaccaattttaaaattatacctaataatatt |
51832590 |
T |
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| Q |
151 |
aaaattggtttgtagtcgtaatggtctctgtctaccatttaacactcctataatacacttggtcgctttaagagttgtttgtaatcattttcacattttt |
250 |
Q |
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| T |
51832589 |
aaaattggtttgtagtcataatggtctctgtctaccatttaacactcctataatacacttggtcgctttaagagttgtttgtaatcattttcacattttt |
51832490 |
T |
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| Q |
251 |
gtgagtgtgttcttgctaaaattttctttacctatatataataccgggtacatttactgatcgacctaatgcatctttaccgtcttcc |
338 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||| ||||||||||||||||| |
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| T |
51832489 |
gtgagtgtgttcttgctaaaattttctttacc----tataataccgggtgcatttactgattgacctaatacatctttaccgtcttcc |
51832406 |
T |
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