View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1833_low_1 (Length: 625)
Name: NF1833_low_1
Description: NF1833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1833_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 567; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 9 - 607
Target Start/End: Original strand, 43654964 - 43655562
Alignment:
| Q |
9 |
ggtagattattctaacaattcaacttttagcattgtcaaagtggatatgcatcaaattagatgcacttatcgaatgcccatccaaagaattttacaggat |
108 |
Q |
| |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43654964 |
ggtacattcttctaacaattcaacttttagcattgtcaaagtggatatgcatcaaattagatgcacttatcgaatgcccatccaaagaattttacaggat |
43655063 |
T |
|
| Q |
109 |
cacatggtggaatgattttgacggctgaacttaatgaattctcttgcataggagtatattaatttggaagataatgcactacataactatttctttatgg |
208 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43655064 |
cacatggtggaatgattttgacggctgaacttaatgaattctcttgcataggagtatattaatttggaagataatgcactacataactatttctttatgg |
43655163 |
T |
|
| Q |
209 |
tgtgaagtttgtatactgtgatgaagatttactatactatttagtggccatggaaaggcaatcagtctttacttagttgagcaaggagatgagatatgtc |
308 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||| |
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| T |
43655164 |
tgtgaagtttgtatactgtgatgaagatttactatactatttagtggccatggaaaggcaatcaatatttacttagttgagcaaggagatgaggtatgtc |
43655263 |
T |
|
| Q |
309 |
ttcagcttgcttgaatatcttttatgaagctaattttttatttacataagaagaagacctttatattaatatgtaaggtataagacaatcaagtttgatt |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43655264 |
ttcagcttgcttgaatatcttttatgaagctaaatttttatttacataagaagaagacctttatattaatatgtaaggtataagacaatcaagtttgatt |
43655363 |
T |
|
| Q |
409 |
tgtggtctaagatcataaggatgtgtgatagtataatacactacacaagaatattgttttgaaaagcttcttatgaagtttgtattctgaaaagcgagat |
508 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43655364 |
tgtggtctaagataataaggatgtgtgatagtataatacactacacaagaatattgttttgaaaagcttcttatgaagtttgtattctgaaaagcgagat |
43655463 |
T |
|
| Q |
509 |
gagtatcccttatgatcaatactacttggaaaaaagaattgatgtttaattcacttgtgacaatttaattgaaatccatatatccttaaatatttatac |
607 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
43655464 |
gagtatcccttatgatcaatactacttggaaaaaagaattgatgtttaattcacttgtgacaatttaattgaaatccatatatccttaaacatttatac |
43655562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 43654279 - 43654315
Alignment:
| Q |
48 |
agtggatatgcatcaaattagatgcacttatcgaatg |
84 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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|
| T |
43654279 |
agtggatatgcatcaaattagatgcacttatcgaatg |
43654315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 442; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 9 - 577
Target Start/End: Original strand, 8363925 - 8364494
Alignment:
| Q |
9 |
ggtagattattctaacaattcaacttttagcattgtcaaagtggatatgcatcaaattagatgcacttatcgaatgcccatccaaagaattttacaggat |
108 |
Q |
| |
|
|||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
8363925 |
ggtacattcttctaacaattcaacttttagtattgtcaaagtggatatgcatcaaattagatgcacttatcgaatgcccatccaaaaaaatttacaggat |
8364024 |
T |
|
| Q |
109 |
cacatggtggaatgattttgacggctgaacttaatgaattctcttgcataggagtatattaatttggaagataatgcactacataactatttctttatgg |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
8364025 |
cacatggtggaatgattttgacggctgaacttaatgagttctgttgcataggagtatattaattcggaagataatgcactacataactatttctttatgg |
8364124 |
T |
|
| Q |
209 |
tgtgaagtttgtatactgtgatgaagatttactatactatttagtggccatggaaaggcaatcagtctttacttagttgagcaaggagatgagatatgtc |
308 |
Q |
| |
|
||||||||||||||||| |||| ||||||||| |||||||||||||| ||||||||||||| ||| |||||||||| | |||||||||||||| |||||| |
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|
| T |
8364125 |
tgtgaagtttgtatactatgataaagatttaccatactatttagtgggcatggaaaggcaagcagcctttacttagcttagcaaggagatgaggtatgtc |
8364224 |
T |
|
| Q |
309 |
ttcagcttgcttgaatatcttttatgaagctaattttttatttacataagaagaagacctttatattaatatgtaaggtataagacaatcaagtttgatt |
408 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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|
| T |
8364225 |
ttcagcttgcttgaatatctcttatgaagctaattttttatttacataagaagaagacctttatattaatgtgtaaggtataagataatcaagtttgatt |
8364324 |
T |
|
| Q |
409 |
tgtggtctaagatcataaggatgtgtgatagtataatacactacacaagaatattgttttgaaaagcttcttatgaagtttgtattctgaaaagcgagat |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| | |
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|
| T |
8364325 |
tgtggtctaagatcataaggatgtgtgatagtataattcactacacaagaatattgttttgaaaaggttcttatgaagtttgtattctgaaaagagagtt |
8364424 |
T |
|
| Q |
509 |
gagtatcccttatgatcaatactacttg-gaaaaaagaattgatgtttaattcacttgtgacaatttaat |
577 |
Q |
| |
|
|||| ||||||||||||||| ||||||| |||||| ||||||||||||||| ||||| ||||||||||| |
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|
| T |
8364425 |
gagtgtcccttatgatcaatgctacttgaaaaaaaaaaattgatgtttaattaacttgcgacaatttaat |
8364494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 561 - 606
Target Start/End: Original strand, 8364509 - 8364554
Alignment:
| Q |
561 |
acttgtgacaatttaattgaaatccatatatccttaaatatttata |
606 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
8364509 |
acttgtgacaatttaattgcaatccatatatccttaaacatttata |
8364554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 18 - 598
Target Start/End: Complemental strand, 32404639 - 32404051
Alignment:
| Q |
18 |
ttctaacaattcaacttttagcattgtcaaagtggatatgcatcaaa-ttagatgcacttatcgaatgcccatccaaagaattttacaggatcacatggt |
116 |
Q |
| |
|
|||||||||||||||| ||| |||| || |||||| | ||||||||| |||||||||||||||||||||| || |||||| || |||||||||||||||| |
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|
| T |
32404639 |
ttctaacaattcaactgttaacattttctaagtgggtttgcatcaaaattagatgcacttatcgaatgcctattcaaagagttgtacaggatcacatggt |
32404540 |
T |
|
| Q |
117 |
ggaatgattttgacggctgaacttaatgaattctcttgcataggagtatattaatttggaagataatgcactacataactatttctttatggtgtgaagt |
216 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32404539 |
ggaatgattttgatggctgaacttaatgagttctcttgcataggagtatattaattcagaagataatgcactacataactatttctttatggtgtgaagt |
32404440 |
T |
|
| Q |
217 |
ttgtatactgtgatgaagatttactatactatttagtggccatggaaaggcaatcagtctttacttagttgagcaaggagatgagatatgtcttcagctt |
316 |
Q |
| |
|
||||||| | |||| ||||||||| |||||||||||||||||||||||||||| ||| |||||||||| | |||||||||||||| |||||||||||||| |
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|
| T |
32404439 |
ttgtata-tatgataaagatttaccatactatttagtggccatggaaaggcaagcagcctttacttagcttagcaaggagatgaggtatgtcttcagctt |
32404341 |
T |
|
| Q |
317 |
gcttgaatatcttttatgaagctaattttttatttacataagaagaagacctttatattaatatgtaaggtataagacaatcaagtttgatttgtggtct |
416 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32404340 |
gcttgaatatctcttatgaagctaattttttatttacataagaagaagacctttatattaatgtgtaaggtataagacaatcaagtttgatttgtggtct |
32404241 |
T |
|
| Q |
417 |
aagatcataaggatgtgtgatagtataatacactacacaagaatattgttttgaaaagcttcttatgaagtttgtattctgaaaagcgagatgagtatcc |
516 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||| ||||||||| |
|
|
| T |
32404240 |
aagatcataaggatgtgtgatagtataattcactacacaagaatattgttttgaaaaggttcttatgaagtttgtattctcaaaagagagttgagtatcc |
32404141 |
T |
|
| Q |
517 |
cttatgatcaatactacttggaaaaaagaa--------ttgatgtttaattcacttgtgacaatttaattgaaatccatatatccttaaa |
598 |
Q |
| |
|
||||||||||| ||||||| |||||| || ||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
32404140 |
cttatgatcaaggctacttgaaaaaaaaaaaaaaaaacttgatgtttaattaacttgtgacaatttaattgaaatccatatatccgtaaa |
32404051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 387 - 466
Target Start/End: Original strand, 8586418 - 8586496
Alignment:
| Q |
387 |
tataagacaatcaagtttgatttgtggtctaagatcataaggatgtgtgatagtataatacactacacaagaatattgtt |
466 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||| ||| ||||||||||||||||||||| | ||||||||||||||| |
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|
| T |
8586418 |
tataagataatcaagtgtgatttgtggtctaagattatagggatgtgtgatagtataatactat-cacaagaatattgtt |
8586496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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