View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1833_low_10 (Length: 345)

Name: NF1833_low_10
Description: NF1833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1833_low_10
NF1833_low_10
[»] chr4 (7 HSPs)
chr4 (30-270)||(36013160-36013405)
chr4 (50-273)||(47335692-47335919)
chr4 (47-273)||(39869515-39869745)
chr4 (189-256)||(47326752-47326819)
chr4 (189-256)||(47341548-47341615)
chr4 (189-273)||(39870229-39870313)
chr4 (203-251)||(36013929-36013977)
[»] chr6 (3 HSPs)
chr6 (20-273)||(16765797-16766063)
chr6 (103-154)||(9453727-9453777)
chr6 (202-273)||(16764925-16764997)
[»] chr3 (3 HSPs)
chr3 (47-107)||(31598212-31598272)
chr3 (189-267)||(31598757-31598836)
chr3 (216-273)||(31598149-31598207)
[»] chr5 (1 HSPs)
chr5 (118-249)||(17766588-17766718)
[»] chr2 (1 HSPs)
chr2 (135-171)||(16044095-16044131)


Alignment Details
Target: chr4 (Bit Score: 153; Significance: 5e-81; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 30 - 270
Target Start/End: Complemental strand, 36013405 - 36013160
Alignment:
Q  30 ctcagtttttccaactc----gtgaatttgtgttcttctatgtgttgaaaactaagattgagagaaaagatgaatagtgtggtggtggtgattgagtgca 125  Q
    |||||||||||||||||    |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  36013405 ctcagtttttccaactcagtagtgaatttgtgttcttctgtgtgttgaaaactaagattgagaggaaagatgaatagtgtggtggtggtggttgagtgca 36013306  T
Q  126 tgagtggggggaatggaagagagagaatgttgatggattatatagtatggatatgccatcataaaatctgttttcttctttaatctaactgtccaacaaa 225  Q
    |||||||||||||||||||||||||||||||||||||| |||| || |||| || |||||||||||| ||| ||||||||||||||||| ||| || |||    
T  36013305 tgagtggggggaatggaagagagagaatgttgatggatgatatggtctggacataccatcataaaatttgtgttcttctttaatctaaccgtctaaaaaa 36013206  T
Q  226 actttcccacggtgagaaacaacttttcttt-tcatgctaaacccc 270  Q
    |||||||||| ||  ||||||||||||||||  |||||||||||||    
T  36013205 actttcccaccgtaggaaacaacttttctttcccatgctaaacccc 36013160  T

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Target: chr4; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 50 - 273
Target Start/End: Complemental strand, 47335919 - 47335692
Alignment:
Q  50 aatttgtgttcttctatgtgttgaaaactaagattgagagaaaagatgaatagtgtggtggtggtgat---tgagtgcatgagtggggggaatggaagag 146  Q
    ||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||| |   |||||||||||||||||||||||||||||    
T  47335919 aatttgtgttcttctgtgcgttgaaaactaagattgagaggaaagatgaatagtgtggtggtggtggtggttgagtgcatgagtggggggaatggaagag 47335820  T
Q  147 agagaatgttgatggattatatagtatggatatgccatcataaaatctgttttcttctttaatctaactgtccaacaaaactttcccacggtgagaaaca 246  Q
    ||| ||||||||||||| |||||||||||| || |||| ||||||| ||| ||||||||||||||||| |||||| ||||||||  ||||||| ||| ||    
T  47335819 agataatgttgatggatgatatagtatggacataccattataaaatttgtgttcttctttaatctaaccgtccaaaaaaactttttcacggtgggaatca 47335720  T
Q  247 acttttcttt-tcatgctaaaccccacc 273  Q
    | ||||||||  ||||||||||||||||    
T  47335719 atttttctttcccatgctaaaccccacc 47335692  T

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Target: chr4; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 47 - 273
Target Start/End: Complemental strand, 39869745 - 39869515
Alignment:
Q  47 gtgaatttgtgttcttctatgtgttgaaaactaagattgagagaaaagatgaatagtgtggtggtggtgat---tgagtgcatgagtggggggaatggaa 143  Q
    |||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||| |   |||||||||||||||||||  |||||    
T  39869745 gtgaatttgtgttcttctgtgtgttgaaaactaagattgagaggaa-gatgaatagtgtggtggtggtggtggttgagtgcatgagtggggggtgtggaa 39869647  T
Q  144 gagagagaatgttgatggattatatagtatggatatg-ccatcataaaatctgttttcttctttaatctaactgtccaacaaaactttcccacggtgaga 242  Q
    ||||||  |||||||||||| ||||||||| || ||  |||||||||||| ||| |||||||||||||||||||||||| |||||||||| |  ||||||    
T  39869646 gagagatgatgttgatggatgatatagtatagacattaccatcataaaatttgtgttcttctttaatctaactgtccaaaaaaactttcctatagtgaga 39869547  T
Q  243 aacaacttttcttt-tcatgctaaaccccacc 273  Q
    ||||| |||||||| |||||||||||||||||    
T  39869546 aacaatttttctttctcatgctaaaccccacc 39869515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 256
Target Start/End: Original strand, 47326752 - 47326819
Alignment:
Q  189 aaatctgttttcttctttaatctaactgtccaacaaaactttcccacggtgagaaacaacttttcttt 256  Q
    ||||| || ||| |||||||||||||||| ||| |||||||||||| |||| ||||||||||| ||||    
T  47326752 aaatcagtgttcctctttaatctaactgttcaaaaaaactttcccatggtgggaaacaactttccttt 47326819  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 256
Target Start/End: Original strand, 47341548 - 47341615
Alignment:
Q  189 aaatctgttttcttctttaatctaactgtccaacaaaactttcccacggtgagaaacaacttttcttt 256  Q
    ||||| || ||| |||||||||||||||| ||| |||||||||||| |||| ||||||||||| ||||    
T  47341548 aaatcagtgttcctctttaatctaactgttcaaaaaaactttcccatggtgggaaacaactttccttt 47341615  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 273
Target Start/End: Original strand, 39870229 - 39870313
Alignment:
Q  189 aaatctgttttcttctttaatctaactgtccaacaaaactttcccacggtgagaaacaacttttcttt-tcatgctaaaccccacc 273  Q
    ||||| || ||| |||||||||||||||| ||| |||||||  ||| |||| ||||||||||||||||  |||||||||| |||||    
T  39870229 aaatcagtgttcctctttaatctaactgttcaa-aaaacttctccatggtgggaaacaacttttctttcccatgctaaactccacc 39870313  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 36013929 - 36013977
Alignment:
Q  203 ctttaatctaactgtccaacaaaactttcccacggtgagaaacaacttt 251  Q
    ||||||||||||||| ||| |||||||||||| ||||  ||||||||||    
T  36013929 ctttaatctaactgttcaaaaaaactttcccatggtggtaaacaacttt 36013977  T

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Target: chr6 (Bit Score: 131; Significance: 6e-68; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 20 - 273
Target Start/End: Original strand, 16765797 - 16766063
Alignment:
Q  20 taaagcacaactcagtttttccaactc----gtgaatttgtgttcttctatgtgttgaaaactaagattgagagaaaagatgaatagt---gtggtggtg 112  Q
    |||||||||||||||||||||||||||     ||||||||||||||| | |||||||||||||||||||||||| |||||||||||||   |||||||||    
T  16765797 taaagcacaactcagtttttccaactcagtgatgaatttgtgttcttttgtgtgttgaaaactaagattgagaggaaagatgaatagtgtggtggtggtg 16765896  T
Q  113 gtgattgagtgcatgagtggggggaatggaagagagagaatgttgatggat----tatatagtatggatatgccatcataaaatctgttttcttctttaa 208  Q
    ||| ||||||||||||||||||||||||||||||||| |||||||||||||    ||||||||||||| || | |||||||||| ||| |||||||||||    
T  16765897 gtggttgagtgcatgagtggggggaatggaagagagataatgttgatggatgatgtatatagtatggacatactatcataaaatttgtgttcttctttaa 16765996  T
Q  209 tctaactgtcc-aacaaaactttcccacggtgagaaacaacttttcttt-tcatgctaaaccccacc 273  Q
    |||||| |||| || |||||||| ||| ||||  |||||||||||||||  ||||||||||||||||    
T  16765997 tctaaccgtccaaaaaaaacttttccatggtggaaaacaacttttctttcccatgctaaaccccacc 16766063  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 103 - 154
Target Start/End: Original strand, 9453727 - 9453777
Alignment:
Q  103 tgtggtggtggtgattgagtgcatgagtggggggaatggaagagagagaatg 154  Q
    |||||||||||||  ||||||||||||| ||||||||||| |||||||||||    
T  9453727 tgtggtggtggtgggtgagtgcatgagt-gggggaatggaggagagagaatg 9453777  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 273
Target Start/End: Complemental strand, 16764997 - 16764925
Alignment:
Q  202 tctttaatctaactgtccaacaaaactttcccacggtgagaaacaacttttcttt-tcatgctaaaccccacc 273  Q
    |||||||||||| ||| ||| ||||||| |||| |||| ||||||||||| ||||  |||||||||| |||||    
T  16764997 tctttaatctaattgttcaaaaaaacttccccatggtgggaaacaactttcctttcccatgctaaactccacc 16764925  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 31598272 - 31598212
Alignment:
Q  47 gtgaatttgtgttcttctatgtgttgaaaactaagattgagagaaaagatgaatagtgtgg 107  Q
    |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  31598272 gtgaatttgtgttcttctgtgtgttgaaaactaagattgagaggaaagatgaatagtgtgg 31598212  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 189 - 267
Target Start/End: Original strand, 31598757 - 31598836
Alignment:
Q  189 aaatctgttttcttctttaatctaactgtccaacaaaactttcccacggtgagaaacaacttttctttt-catgctaaac 267  Q
    ||||| || ||| |||||||||||||||| ||| |||||||||||| |||| ||||||||||||||||| ||||||||||    
T  31598757 aaatcagtgttcctctttaatctaactgttcaaaaaaactttcccatggtgggaaacaacttttcttttccatgctaaac 31598836  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 273
Target Start/End: Complemental strand, 31598207 - 31598149
Alignment:
Q  216 gtccaacaaaactttcccacggtgagaaacaacttttcttt-tcatgctaaaccccacc 273  Q
    |||||| |||||||||| || ||| ||||||||||||||||  ||||||||||||||||    
T  31598207 gtccaaaaaaactttcctacagtgggaaacaacttttctttcccatgctaaaccccacc 31598149  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 118 - 249
Target Start/End: Complemental strand, 17766718 - 17766588
Alignment:
Q  118 tgagtgcatgagtggggggaatggaagagagagaatgttgatggattatatagtatggatatgccatcataaaatctgttttcttctttaatctaactgt 217  Q
    |||||||||||||||| ||| |||| ||||||||||| | |||||| |||| || ||| ||  | |||||||||| ||| ||| |||| ||||| |  ||    
T  17766718 tgagtgcatgagtgggagga-tggaggagagagaatgataatggatgatatggtgtgggtagactatcataaaatatgtgttcctcttgaatctgatcgt 17766620  T
Q  218 ccaacaaaactttcccacggtgagaaacaact 249  Q
    | || ||||||||| || |||| |||||||||    
T  17766619 caaaaaaaactttctcatggtgggaaacaact 17766588  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 16044095 - 16044131
Alignment:
Q  135 ggaatggaagagagagaatgttgatggattatatagt 171  Q
    |||||||| |||||||||||||||||||| |||||||    
T  16044095 ggaatggaggagagagaatgttgatggatgatatagt 16044131  T

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