View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1833_low_12 (Length: 260)

Name: NF1833_low_12
Description: NF1833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1833_low_12
NF1833_low_12
[»] chr6 (5 HSPs)
chr6 (15-202)||(14659779-14659966)
chr6 (190-247)||(27597386-27597443)
chr6 (190-242)||(33703827-33703879)
chr6 (190-243)||(12896551-12896604)
chr6 (13-64)||(14670309-14670360)
[»] chr1 (8 HSPs)
chr1 (190-247)||(24187803-24187860)
chr1 (190-247)||(34394739-34394796)
chr1 (190-247)||(27841499-27841556)
chr1 (190-249)||(22872788-22872847)
chr1 (190-247)||(32715467-32715524)
chr1 (190-243)||(8066715-8066768)
chr1 (190-247)||(51235107-51235164)
chr1 (191-248)||(791533-791590)
[»] chr2 (4 HSPs)
chr2 (190-249)||(41193354-41193413)
chr2 (190-242)||(31366603-31366655)
chr2 (190-247)||(2152947-2153004)
chr2 (190-247)||(12840798-12840855)
[»] chr5 (5 HSPs)
chr5 (190-247)||(3524252-3524309)
chr5 (190-249)||(26817152-26817211)
chr5 (190-247)||(42908462-42908519)
chr5 (190-249)||(31070497-31070556)
chr5 (190-247)||(28749095-28749152)
[»] chr4 (4 HSPs)
chr4 (190-242)||(38937077-38937129)
chr4 (193-241)||(6583940-6583988)
chr4 (190-241)||(35651976-35652027)
chr4 (196-249)||(46173211-46173264)
[»] chr8 (4 HSPs)
chr8 (190-249)||(14338387-14338446)
chr8 (191-249)||(33690381-33690439)
chr8 (190-247)||(10904462-10904519)
chr8 (190-247)||(34361794-34361851)
[»] scaffold0488 (1 HSPs)
scaffold0488 (190-247)||(6087-6144)
[»] chr3 (3 HSPs)
chr3 (190-249)||(10221794-10221853)
chr3 (190-248)||(44772758-44772816)
chr3 (190-247)||(25614320-25614377)
[»] chr7 (4 HSPs)
chr7 (190-243)||(33380918-33380971)
chr7 (190-246)||(28683128-28683184)
chr7 (192-232)||(32747062-32747102)
chr7 (194-242)||(38888275-38888323)


Alignment Details
Target: chr6 (Bit Score: 163; Significance: 4e-87; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 15 - 202
Target Start/End: Complemental strand, 14659966 - 14659779
Alignment:
Q  15 tatacttcacctcattattcaattttacaggttggttacacaatgaaaatcagcttttgtttttatttatgtgtatcattggtttgttaagagtaatgac 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14659966 tatacttcacctcattattcaattttacaggttggttacacaatgaaaatcagcttttgtttttatttatgtgtatcattggtttgttaagagtaatgac 14659867  T
Q  115 ttcgcttaaatagcaaaacatagcttggtnnnnnnnccaaggagccaaccattgctccagacttggttcggttcaaacggttcggttc 202  Q
    ||| |||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14659866 ttcacttaaatagcaaaacatagcttggtaaaaaaaccaaggagccaaccattgctccagacttggttcggttcaaacggttcggttc 14659779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 27597386 - 27597443
Alignment:
Q  190 aacggttcggttcatgaaccattataatggtccagttatttttggttcggttcggttc 247  Q
    ||||||||||||| ||||||||||||||||| | |||||||||||||| |||||||||    
T  27597386 aacggttcggttcgtgaaccattataatggttcggttatttttggttcagttcggttc 27597443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 33703827 - 33703879
Alignment:
Q  190 aacggttcggttcatgaaccattataatggtccagttatttttggttcggttc 242  Q
    |||| |||||||| ||||||||||||||||| | |||||||||||||||||||    
T  33703827 aacgattcggttcgtgaaccattataatggttcggttatttttggttcggttc 33703879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 243
Target Start/End: Complemental strand, 12896604 - 12896551
Alignment:
Q  190 aacggttcggttcatgaaccattataatggtccagttatttttggttcggttcg 243  Q
    ||||||||||||||||||| ||||||||||| | |||||||||  |||||||||    
T  12896604 aacggttcggttcatgaacaattataatggttcggttattttttattcggttcg 12896551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 14670360 - 14670309
Alignment:
Q  13 catatacttcacctcattattcaattttacaggttggttacacaatgaaaat 64  Q
    |||||||||||||||||||| | |||||||||||| |||  |||||||||||    
T  14670360 catatacttcacctcattataccattttacaggttagtttaacaatgaaaat 14670309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 24187803 - 24187860
Alignment:
Q  190 aacggttcggttcatgaaccattataatggtccagttatttttggttcggttcggttc 247  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  24187803 aacggttcagttcatgaaccattataatggttcagttatttttggttcggttcggttc 24187860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 34394739 - 34394796
Alignment:
Q  190 aacggttcggttcatgaaccattataatggtccagttatttttggttcggttcggttc 247  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  34394739 aacggttcggttcatgaaccattataatggttcggttatttttggttcggttcggttc 34394796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 27841556 - 27841499
Alignment:
Q  190 aacggttcggttcatgaaccattataatggtccagttatttttggttcggttcggttc 247  Q
    ||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  27841556 aacggtttggttcatgaaccattataatggttcggttatttttggttcggttcggttc 27841499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 249
Target Start/End: Original strand, 22872788 - 22872847
Alignment:
Q  190 aacggttcggttcatgaaccattataatggtccagttatttttggttcggttcggttcat 249  Q
    ||||||||||||| ||||||||||||||||| | ||||||||| ||||||||||||||||    
T  22872788 aacggttcggttcttgaaccattataatggttcggttattttttgttcggttcggttcat 22872847  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 32715467 - 32715524
Alignment:
Q  190 aacggttcggttcatgaaccattataatggtccagttatttttggttcggttcggttc 247  Q
    ||||||||||||  ||||||||||||||||| | ||||||||||||||||||||||||    
T  32715467 aacggttcggtttgtgaaccattataatggttcggttatttttggttcggttcggttc 32715524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 243
Target Start/End: Original strand, 8066715 - 8066768
Alignment:
Q  190 aacggttcggttcatgaaccattataatggtccagttatttttggttcggttcg 243  Q
    ||||||||||||| ||||||||||||||||| | ||||||||| ||||||||||    
T  8066715 aacggttcggttcgtgaaccattataatggttcggttatttttagttcggttcg 8066768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 51235164 - 51235107
Alignment:
Q  190 aacggttcggttcatgaaccattataatggtccagttatttttggttcggttcggttc 247  Q
    ||||||||||||| |||||||||| |||||| | |||||||||| |||| ||||||||    
T  51235164 aacggttcggttcgtgaaccattagaatggttcggttatttttgattcgattcggttc 51235107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 248
Target Start/End: Original strand, 791533 - 791590
Alignment:
Q  191 acggttcggttcatgaaccattataatggtccagttatttttggttcggttcggttca 248  Q
    |||||||||||| |||||| |||||||||| |  |||||| ||||| |||||||||||    
T  791533 acggttcggttcgtgaacctttataatggttcgattatttatggtttggttcggttca 791590  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 190 - 249
Target Start/End: Complemental strand, 41193413 - 41193354
Alignment:
Q  190 aacggttcggttcatgaaccattataatggtccagttatttttggttcggttcggttcat 249  Q
    ||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||    
T  41193413 aacggttcggttcgtgaaccattataatggttcggttatttttggttcggttcggttcat 41193354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 31366603 - 31366655
Alignment:
Q  190 aacggttcggttcatgaaccattataatggtccagttatttttggttcggttc 242  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  31366603 aacggttcggttcatgaaccattataatggttcggttatttttggttcggttc 31366655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 2153004 - 2152947
Alignment:
Q  190 aacggttcggttcatgaaccattataatggtccagttatttttggttcggttcggttc 247  Q
    ||||||||||||| ||||||||||||||||| | ||||||||||||||| ||||||||    
T  2153004 aacggttcggttcgtgaaccattataatggttcggttatttttggttcgattcggttc 2152947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 12840798 - 12840855
Alignment:
Q  190 aacggttcggttcatgaaccattataatggtccagttatttttggttcggttcggttc 247  Q
    ||||||||||||| ||||||||||||||  | | ||||||||||||||| ||||||||    
T  12840798 aacggttcggttcgtgaaccattataataattcggttatttttggttcgattcggttc 12840855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 3524252 - 3524309
Alignment:
Q  190 aacggttcggttcatgaaccattataatggtccagttatttttggttcggttcggttc 247  Q
    ||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||    
T  3524252 aacggttcggttcatgaaccattataatgattcggttatttttggttcggttcggttc 3524309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 249
Target Start/End: Complemental strand, 26817211 - 26817152
Alignment:
Q  190 aacggttcggttcatgaaccattataatggtccagttatttttggttcggttcggttcat 249  Q
    ||||||||||||| ||||||||||||||||| | ||| ||||| ||||||||||||||||    
T  26817211 aacggttcggttcgtgaaccattataatggttcggttgttttttgttcggttcggttcat 26817152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 42908462 - 42908519
Alignment:
Q  190 aacggttcggttcatgaaccattataatggtccagttatttttggttcggttcggttc 247  Q
    ||||||||||||| ||||||||||||||||| |  ||||||||| |||||||||||||    
T  42908462 aacggttcggttcgtgaaccattataatggttcgattatttttgattcggttcggttc 42908519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 249
Target Start/End: Original strand, 31070497 - 31070556
Alignment:
Q  190 aacggttcggttcatgaaccattataatggtccagttatttttggttcggttcggttcat 249  Q
    |||| |||||||| ||||||||||||||| | | |||||||||||||||||||| |||||    
T  31070497 aacgattcggttcgtgaaccattataatgattcggttatttttggttcggttcgattcat 31070556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 28749095 - 28749152
Alignment:
Q  190 aacggttcggttcatgaaccattataatggtccagttatttttggttcggttcggttc 247  Q
    ||||||||||||| ||||||||||||||| | |  ||||||||| ||||||| |||||    
T  28749095 aacggttcggttcgtgaaccattataatgattcttttatttttgattcggtttggttc 28749152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 38937077 - 38937129
Alignment:
Q  190 aacggttcggttcatgaaccattataatggtccagttatttttggttcggttc 242  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  38937077 aacggttcggttcaggaaccattataatggttcagttatttttggttcggttc 38937129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 6583940 - 6583988
Alignment:
Q  193 ggttcggttcatgaaccattataatggtccagttatttttggttcggtt 241  Q
    |||||||||| ||||||||||||||||| | ||||||||||||||||||    
T  6583940 ggttcggttcgtgaaccattataatggttcggttatttttggttcggtt 6583988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 35652027 - 35651976
Alignment:
Q  190 aacggttcggttcatgaaccattataatggtccagttatttttggttcggtt 241  Q
    |||||||||||||||||||||||||||| ||   ||||||||||||||||||    
T  35652027 aacggttcggttcatgaaccattataatagtttggttatttttggttcggtt 35651976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 249
Target Start/End: Original strand, 46173211 - 46173264
Alignment:
Q  196 tcggttcatgaaccattataatggtccagttatttttggttcggttcggttcat 249  Q
    ||||||| ||||||||||||||| |   |||||||||| |||||||||||||||    
T  46173211 tcggttcgtgaaccattataatgatttggttatttttgattcggttcggttcat 46173264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 249
Target Start/End: Original strand, 14338387 - 14338446
Alignment:
Q  190 aacggttcggttcatgaaccattataatggtccagttatttttggttcggttcggttcat 249  Q
    ||||||||||||| ||||||||||||||||| |  |||||||||||||||||||||||||    
T  14338387 aacggttcggttcgtgaaccattataatggttcgattatttttggttcggttcggttcat 14338446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 191 - 249
Target Start/End: Complemental strand, 33690439 - 33690381
Alignment:
Q  191 acggttcggttcatgaaccattataatggtccagttatttttggttcggttcggttcat 249  Q
    |||||||||||| ||||||||||||||||| | ||||||||||||| ||||||||||||    
T  33690439 acggttcggttcgtgaaccattataatggttcggttatttttggtttggttcggttcat 33690381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 10904462 - 10904519
Alignment:
Q  190 aacggttcggttcatgaaccattataatggtccagttatttttggttcggttcggttc 247  Q
    ||||||||||||| ||||||||||||||||| | |||||||||||||||||| |||||    
T  10904462 aacggttcggttcgtgaaccattataatggttcggttatttttggttcggtttggttc 10904519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 34361794 - 34361851
Alignment:
Q  190 aacggttcggttcatgaaccattataatggtccagttatttttggttcggttcggttc 247  Q
    |||||||| |||| |||||||||||||| || | ||||||||||||||||||||||||    
T  34361794 aacggttcagttcgtgaaccattataatagttcggttatttttggttcggttcggttc 34361851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0488 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0488
Description:

Target: scaffold0488; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 6144 - 6087
Alignment:
Q  190 aacggttcggttcatgaaccattataatggtccagttatttttggttcggttcggttc 247  Q
    ||||||||||||| ||||||||||||||||| | |||||||||||||| |||||||||    
T  6144 aacggttcggttcgtgaaccattataatggttcggttatttttggttcagttcggttc 6087  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 249
Target Start/End: Complemental strand, 10221853 - 10221794
Alignment:
Q  190 aacggttcggttcatgaaccattataatggtccagttatttttggttcggttcggttcat 249  Q
    ||||||||||||| ||||||||||||||||| | ||| ||||| ||||||||||||||||    
T  10221853 aacggttcggttcgtgaaccattataatggttcggttgttttttgttcggttcggttcat 10221794  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 44772816 - 44772758
Alignment:
Q  190 aacggttcggttcatgaaccattataatggtccagttatttttggttcggttcggttca 248  Q
    ||||||||||||| ||||| ||||||||| | | |||||||||||||||||||||||||    
T  44772816 aacggttcggttcgtgaactattataatgattcggttatttttggttcggttcggttca 44772758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 25614377 - 25614320
Alignment:
Q  190 aacggttcggttcatgaaccattataatggtccagttatttttggttcggttcggttc 247  Q
    ||||||||||||| ||||||||||||||||| |  |||| ||||||||| ||||||||    
T  25614377 aacggttcggttcgtgaaccattataatggttcgattatatttggttcgattcggttc 25614320  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 243
Target Start/End: Complemental strand, 33380971 - 33380918
Alignment:
Q  190 aacggttcggttcatgaaccattataatggtccagttatttttggttcggttcg 243  Q
    ||||||||||||| |||||||||||||||||   ||||||||||||||||||||    
T  33380971 aacggttcggttcgtgaaccattataatggtttggttatttttggttcggttcg 33380918  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 190 - 246
Target Start/End: Original strand, 28683128 - 28683184
Alignment:
Q  190 aacggttcggttcatgaaccattataatggtccagttatttttggttcggttcggtt 246  Q
    ||||||||||||  |||||||||| |||||| | |||||||||||||||||||||||    
T  28683128 aacggttcggtttgtgaaccattaaaatggttcggttatttttggttcggttcggtt 28683184  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 232
Target Start/End: Original strand, 32747062 - 32747102
Alignment:
Q  192 cggttcggttcatgaaccattataatggtccagttattttt 232  Q
    ||||||||||| ||||||||||||||||| | |||||||||    
T  32747062 cggttcggttcgtgaaccattataatggttcggttattttt 32747102  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 38888323 - 38888275
Alignment:
Q  194 gttcggttcatgaaccattataatggtccagttatttttggttcggttc 242  Q
    ||||||||| | ||||||||||||||| | |||||||||||||| ||||    
T  38888323 gttcggttcgtaaaccattataatggttcggttatttttggttcagttc 38888275  T

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