View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1833_low_14 (Length: 246)
Name: NF1833_low_14
Description: NF1833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1833_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 85 - 153
Target Start/End: Complemental strand, 33469435 - 33469363
Alignment:
| Q |
85 |
tccttattcttcctaacttggg----atggtgtagaaaaaatgtcacatcacttaaataagacaaatactgta |
153 |
Q |
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| T |
33469435 |
tccttattcttcctaacttgggtgggatagtatagaaaaaatgtcacatcacttaaataaaacaaatactgta |
33469363 |
T |
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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 13049370 - 13049291
Alignment:
| Q |
166 |
gtaataattgtaaaaatgttagccacaatacatgac----------agtacatatatataagagggtacctaaggtagta |
235 |
Q |
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| T |
13049370 |
gtaataatcgtaaaaatgttagccacaatacatgacagtaactttcagtacataaatataagagggtacctaaggtagta |
13049291 |
T |
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