View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1833_low_15 (Length: 236)
Name: NF1833_low_15
Description: NF1833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1833_low_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 35481320 - 35481122
Alignment:
| Q |
25 |
gggttaaaggattggattaggaattgtagtcaagtgagtttcaatctcttttccctttcttccttacctttgnnnnnnngggtcctgcggaatatggctc |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
35481320 |
gggttaaaggattggattaggaattgtagtcaagtgagtttcaatctcttttccctttcttccttacctttgtttttttgggtcctgcggaatatggctc |
35481221 |
T |
|
| Q |
125 |
tttattaatttgggtttagttgcaatattcttttgctttgcctacttaatagaaggacttgatcatttttgttttctctatagcttgtatgttatcttt |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
35481220 |
tttattaatttgggtttagttgcaatattcttttgctttgcctacttaatagaaggacttgatcatttttgttttctctatagcttgtacgttatcttt |
35481122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University