View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1833_low_4 (Length: 439)

Name: NF1833_low_4
Description: NF1833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1833_low_4
NF1833_low_4
[»] chr5 (9 HSPs)
chr5 (50-96)||(39785635-39785681)
chr5 (1-39)||(33855106-33855144)
chr5 (345-422)||(39785554-39785632)
chr5 (4-38)||(18033982-18034016)
chr5 (4-38)||(22512305-22512339)
chr5 (5-38)||(2614716-2614749)
chr5 (353-394)||(3040352-3040393)
chr5 (3-36)||(25915052-25915085)
chr5 (3-39)||(41334728-41334764)
[»] chr2 (9 HSPs)
chr2 (345-394)||(20142943-20142992)
chr2 (353-397)||(38320292-38320336)
chr2 (345-392)||(13716794-13716841)
chr2 (1-38)||(1750414-1750451)
chr2 (1-38)||(16096747-16096784)
chr2 (1-38)||(42849909-42849946)
chr2 (1-38)||(12302316-12302353)
chr2 (357-394)||(31645194-31645231)
chr2 (5-37)||(19047158-19047190)
[»] chr8 (13 HSPs)
chr8 (48-111)||(37425945-37426008)
chr8 (1-38)||(2166026-2166063)
chr8 (3-38)||(28977146-28977181)
chr8 (1-36)||(30912625-30912660)
chr8 (1-36)||(42699259-42699294)
chr8 (5-38)||(11582766-11582799)
chr8 (1-38)||(29705362-29705399)
chr8 (5-38)||(36743550-36743583)
chr8 (200-245)||(37425808-37425853)
chr8 (1-38)||(42197498-42197535)
chr8 (3-36)||(42295197-42295230)
chr8 (353-381)||(38585180-38585208)
chr8 (1-37)||(45397317-45397353)
[»] chr4 (6 HSPs)
chr4 (1-38)||(1771329-1771366)
chr4 (353-392)||(37762782-37762821)
chr4 (353-394)||(24060551-24060592)
chr4 (363-400)||(35033017-35033054)
chr4 (2-38)||(28982886-28982922)
chr4 (4-36)||(43514752-43514784)
[»] chr3 (9 HSPs)
chr3 (1-38)||(25413681-25413718)
chr3 (1-38)||(54246211-54246248)
chr3 (345-409)||(45853018-45853082)
chr3 (2-38)||(52629840-52629876)
chr3 (3-38)||(42100688-42100723)
chr3 (3-38)||(47191090-47191125)
chr3 (5-38)||(46941053-46941086)
chr3 (5-37)||(42394486-42394518)
chr3 (5-37)||(54237097-54237129)
[»] chr1 (5 HSPs)
chr1 (345-394)||(10061567-10061616)
chr1 (353-393)||(35149756-35149796)
chr1 (3-38)||(43571151-43571186)
chr1 (353-387)||(26469926-26469960)
chr1 (5-38)||(5489776-5489809)
[»] scaffold0119 (1 HSPs)
scaffold0119 (3-38)||(685-720)
[»] chr7 (6 HSPs)
chr7 (353-392)||(46297590-46297629)
chr7 (1-38)||(5810987-5811024)
chr7 (5-38)||(24001079-24001112)
chr7 (5-38)||(38160661-38160694)
chr7 (5-38)||(42538498-42538531)
chr7 (2-38)||(41861674-41861710)
[»] chr6 (7 HSPs)
chr6 (3-38)||(7273400-7273435)
chr6 (3-38)||(26670074-26670109)
chr6 (353-392)||(32871845-32871884)
chr6 (5-38)||(9698400-9698433)
chr6 (1-38)||(26466799-26466836)
chr6 (5-38)||(30014343-30014376)
chr6 (353-381)||(34713489-34713517)
[»] scaffold0187 (2 HSPs)
scaffold0187 (1-38)||(14251-14288)
scaffold0187 (1-38)||(24579-24616)
[»] scaffold0038 (1 HSPs)
scaffold0038 (5-37)||(112656-112688)


Alignment Details
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 96
Target Start/End: Complemental strand, 39785681 - 39785635
Alignment:
Q  50 ttgagaagctggtacacttatactacaggtgtacaacaacattgatt 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  39785681 ttgagaagctggtacacttatactacaggtgtacaacaacattgatt 39785635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 33855106 - 33855144
Alignment:
Q  1 ggggtgtaggaataaagggtgttcatgtaatattttccg 39  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  33855106 ggggtgtaggaataaagggtgttcatgtaacattttccg 33855144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 422
Target Start/End: Complemental strand, 39785632 - 39785554
Alignment:
Q  345 tgagactgtttcttgataaattcttgataaaaactctttagagaaataac-gatacttttttaaaagaccgttaatttt 422  Q
    |||||| ||||||||||||||| |||||||||| ||| || | ||||||| ||| |||||| ||||||| |||||||||    
T  39785632 tgagaccgtttcttgataaatttttgataaaaattctctaaataaataactgatgctttttgaaaagactgttaatttt 39785554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 18034016 - 18033982
Alignment:
Q  4 gtgtaggaataaagggtgttcatgtaatattttcc 38  Q
    ||||||||||||||||||||||||||| |||||||    
T  18034016 gtgtaggaataaagggtgttcatgtaacattttcc 18033982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 22512339 - 22512305
Alignment:
Q  4 gtgtaggaataaagggtgttcatgtaatattttcc 38  Q
    ||||||||||||||||||||||||||| |||||||    
T  22512339 gtgtaggaataaagggtgttcatgtaacattttcc 22512305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 2614716 - 2614749
Alignment:
Q  5 tgtaggaataaagggtgttcatgtaatattttcc 38  Q
    |||||||||||||||||||||||||| |||||||    
T  2614716 tgtaggaataaagggtgttcatgtaacattttcc 2614749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 394
Target Start/End: Original strand, 3040352 - 3040393
Alignment:
Q  353 tttcttgataaattcttgataaaaactctttagagaaataac 394  Q
    ||||||||||||||||||||||||||||| |||  |||||||    
T  3040352 tttcttgataaattcttgataaaaactctctaggtaaataac 3040393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 25915052 - 25915085
Alignment:
Q  3 ggtgtaggaataaagggtgttcatgtaatatttt 36  Q
    |||||||||||||||||||||||||||| |||||    
T  25915052 ggtgtaggaataaagggtgttcatgtaacatttt 25915085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 41334728 - 41334764
Alignment:
Q  3 ggtgtaggaataaagggtgttcatgtaatattttccg 39  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  41334728 ggtgtatgaataaagggtgttcatgtaacattttccg 41334764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 345 - 394
Target Start/End: Complemental strand, 20142992 - 20142943
Alignment:
Q  345 tgagactgtttcttgataaattcttgataaaaactctttagagaaataac 394  Q
    ||||||| ||||||||||||||||||||||||||||| |||| |||||||    
T  20142992 tgagactttttcttgataaattcttgataaaaactctctagataaataac 20142943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 353 - 397
Target Start/End: Original strand, 38320292 - 38320336
Alignment:
Q  353 tttcttgataaattcttgataaaaactctttagagaaataacgat 397  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||    
T  38320292 tttcttgataaattcttgataaaaactctctagataaataacgat 38320336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 345 - 392
Target Start/End: Original strand, 13716794 - 13716841
Alignment:
Q  345 tgagactgtttcttgataaattcttgataaaaactctttagagaaata 392  Q
    ||||||| ||||||||||||||||||||||||||||| |||| |||||    
T  13716794 tgagactttttcttgataaattcttgataaaaactctctagataaata 13716841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 1750451 - 1750414
Alignment:
Q  1 ggggtgtaggaataaagggtgttcatgtaatattttcc 38  Q
    |||||||||||||||||||||||||||||| |||||||    
T  1750451 ggggtgtaggaataaagggtgttcatgtaacattttcc 1750414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 16096784 - 16096747
Alignment:
Q  1 ggggtgtaggaataaagggtgttcatgtaatattttcc 38  Q
    |||||||||||||||||||||||||||||| |||||||    
T  16096784 ggggtgtaggaataaagggtgttcatgtaacattttcc 16096747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 42849909 - 42849946
Alignment:
Q  1 ggggtgtaggaataaagggtgttcatgtaatattttcc 38  Q
    |||||||||||||||||||||||||||||| |||||||    
T  42849909 ggggtgtaggaataaagggtgttcatgtaacattttcc 42849946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 12302316 - 12302353
Alignment:
Q  1 ggggtgtaggaataaagggtgttcatgtaatattttcc 38  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  12302316 ggggtgtagaaataaagggtgttcatgtaacattttcc 12302353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 394
Target Start/End: Original strand, 31645194 - 31645231
Alignment:
Q  357 ttgataaattcttgataaaaactctttagagaaataac 394  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  31645194 ttgataaattcttgataaaaactctctagataaataac 31645231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 19047190 - 19047158
Alignment:
Q  5 tgtaggaataaagggtgttcatgtaatattttc 37  Q
    |||||||||||||||||||||||||| ||||||    
T  19047190 tgtaggaataaagggtgttcatgtaacattttc 19047158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 48 - 111
Target Start/End: Complemental strand, 37426008 - 37425945
Alignment:
Q  48 ctttgagaagctggtacacttatactacaggtgtacaacaacattgatttgcaatacacctgcc 111  Q
    ||||||||||||||| || ||||| | ||||| ||||||||||||||||||||| |||| ||||    
T  37426008 ctttgagaagctggtgcagttatattgcaggtctacaacaacattgatttgcaacacacttgcc 37425945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 2166026 - 2166063
Alignment:
Q  1 ggggtgtaggaataaagggtgttcatgtaatattttcc 38  Q
    |||||||||||||||| |||||||||||||||||||||    
T  2166026 ggggtgtaggaataaatggtgttcatgtaatattttcc 2166063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 38
Target Start/End: Complemental strand, 28977181 - 28977146
Alignment:
Q  3 ggtgtaggaataaagggtgttcatgtaatattttcc 38  Q
    |||||||||||||||||||||||||||| |||||||    
T  28977181 ggtgtaggaataaagggtgttcatgtaacattttcc 28977146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 30912625 - 30912660
Alignment:
Q  1 ggggtgtaggaataaagggtgttcatgtaatatttt 36  Q
    |||||||||||||||||||||||||||||| |||||    
T  30912625 ggggtgtaggaataaagggtgttcatgtaacatttt 30912660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 42699294 - 42699259
Alignment:
Q  1 ggggtgtaggaataaagggtgttcatgtaatatttt 36  Q
    |||||||||||||||||||||||||||||| |||||    
T  42699294 ggggtgtaggaataaagggtgttcatgtaacatttt 42699259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 11582799 - 11582766
Alignment:
Q  5 tgtaggaataaagggtgttcatgtaatattttcc 38  Q
    |||||||||||||||||||||||||| |||||||    
T  11582799 tgtaggaataaagggtgttcatgtaacattttcc 11582766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 29705399 - 29705362
Alignment:
Q  1 ggggtgtaggaataaagggtgttcatgtaatattttcc 38  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  29705399 ggggtgtagaaataaagggtgttcatgtaacattttcc 29705362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 36743550 - 36743583
Alignment:
Q  5 tgtaggaataaagggtgttcatgtaatattttcc 38  Q
    |||||||||||||||||||||||||| |||||||    
T  36743550 tgtaggaataaagggtgttcatgtaacattttcc 36743583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 245
Target Start/End: Complemental strand, 37425853 - 37425808
Alignment:
Q  200 ttgtcaattgctaaatcagttgctcctcctgcaattgatagaatat 245  Q
    ||||||| |||| || |||||||||||||| |||||||||||||||    
T  37425853 ttgtcaaatgctgaagcagttgctcctcctacaattgatagaatat 37425808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 42197498 - 42197535
Alignment:
Q  1 ggggtgtaggaataaagggtgttcatgtaatattttcc 38  Q
    |||||||||||||||| ||||||||||||| |||||||    
T  42197498 ggggtgtaggaataaatggtgttcatgtaacattttcc 42197535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 42295230 - 42295197
Alignment:
Q  3 ggtgtaggaataaagggtgttcatgtaatatttt 36  Q
    |||||||||||||||||||||||||||| |||||    
T  42295230 ggtgtaggaataaagggtgttcatgtaacatttt 42295197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 381
Target Start/End: Original strand, 38585180 - 38585208
Alignment:
Q  353 tttcttgataaattcttgataaaaactct 381  Q
    |||||||||||||||||||||||||||||    
T  38585180 tttcttgataaattcttgataaaaactct 38585208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 45397353 - 45397317
Alignment:
Q  1 ggggtgtaggaataaagggtgttcatgtaatattttc 37  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  45397353 ggggtgtaggaataaagggtgttcacgtaacattttc 45397317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 1771329 - 1771366
Alignment:
Q  1 ggggtgtaggaataaagggtgttcatgtaatattttcc 38  Q
    |||||||||||||||||||||||||||||| |||||||    
T  1771329 ggggtgtaggaataaagggtgttcatgtaacattttcc 1771366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 392
Target Start/End: Complemental strand, 37762821 - 37762782
Alignment:
Q  353 tttcttgataaattcttgataaaaactctttagagaaata 392  Q
    |||||||||||||||||||| ||||||||||||| |||||    
T  37762821 tttcttgataaattcttgatgaaaactctttagataaata 37762782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 394
Target Start/End: Complemental strand, 24060592 - 24060551
Alignment:
Q  353 tttcttgataaattcttgataaaaactctttagagaaataac 394  Q
    ||||||||| ||||||||||||||| |||||||| |||||||    
T  24060592 tttcttgatcaattcttgataaaaattctttagataaataac 24060551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 400
Target Start/End: Complemental strand, 35033054 - 35033017
Alignment:
Q  363 aattcttgataaaaactctttagagaaataacgatact 400  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  35033054 aattcttgataaaaactctttagataaataacaatact 35033017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 28982886 - 28982922
Alignment:
Q  2 gggtgtaggaataaagggtgttcatgtaatattttcc 38  Q
    |||||||| |||||||||||||||||||| |||||||    
T  28982886 gggtgtagaaataaagggtgttcatgtaacattttcc 28982922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 43514752 - 43514784
Alignment:
Q  4 gtgtaggaataaagggtgttcatgtaatatttt 36  Q
    ||||||||||||||||||||||||||| |||||    
T  43514752 gtgtaggaataaagggtgttcatgtaacatttt 43514784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 25413718 - 25413681
Alignment:
Q  1 ggggtgtaggaataaagggtgttcatgtaatattttcc 38  Q
    |||||||||||||||||||||||||||||| |||||||    
T  25413718 ggggtgtaggaataaagggtgttcatgtaacattttcc 25413681  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 54246211 - 54246248
Alignment:
Q  1 ggggtgtaggaataaagggtgttcatgtaatattttcc 38  Q
    |||||||||||||||||||||||||||||| |||||||    
T  54246211 ggggtgtaggaataaagggtgttcatgtaacattttcc 54246248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 409
Target Start/End: Original strand, 45853018 - 45853082
Alignment:
Q  345 tgagactgtttcttgataaattcttgataaaaactctttagagaaataacgatacttttttaaaa 409  Q
    ||||||| ||||||||| |||||||||||||| |||| |||| ||||||| || || ||||||||    
T  45853018 tgagactttttcttgattaattcttgataaaatctctatagataaataacaatgctcttttaaaa 45853082  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 52629876 - 52629840
Alignment:
Q  2 gggtgtaggaataaagggtgttcatgtaatattttcc 38  Q
    ||||||||||||||| |||||||||||||||||||||    
T  52629876 gggtgtaggaataaaaggtgttcatgtaatattttcc 52629840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 38
Target Start/End: Complemental strand, 42100723 - 42100688
Alignment:
Q  3 ggtgtaggaataaagggtgttcatgtaatattttcc 38  Q
    |||||||||||||||||||||||||||| |||||||    
T  42100723 ggtgtaggaataaagggtgttcatgtaacattttcc 42100688  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 38
Target Start/End: Original strand, 47191090 - 47191125
Alignment:
Q  3 ggtgtaggaataaagggtgttcatgtaatattttcc 38  Q
    |||||||||||||||||||||||||||| |||||||    
T  47191090 ggtgtaggaataaagggtgttcatgtaacattttcc 47191125  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 46941086 - 46941053
Alignment:
Q  5 tgtaggaataaagggtgttcatgtaatattttcc 38  Q
    |||||||||||||||||||||||||| |||||||    
T  46941086 tgtaggaataaagggtgttcatgtaacattttcc 46941053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 42394486 - 42394518
Alignment:
Q  5 tgtaggaataaagggtgttcatgtaatattttc 37  Q
    |||||||||||||||||||||||||| ||||||    
T  42394486 tgtaggaataaagggtgttcatgtaacattttc 42394518  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 54237129 - 54237097
Alignment:
Q  5 tgtaggaataaagggtgttcatgtaatattttc 37  Q
    |||||||||||||||||||||||||| ||||||    
T  54237129 tgtaggaataaagggtgttcatgtaacattttc 54237097  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 345 - 394
Target Start/End: Complemental strand, 10061616 - 10061567
Alignment:
Q  345 tgagactgtttcttgataaattcttgataaaaactctttagagaaataac 394  Q
    ||||||| ||| ||||||||||||||||||||||||| |||| |||||||    
T  10061616 tgagacttttttttgataaattcttgataaaaactctctagataaataac 10061567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 353 - 393
Target Start/End: Original strand, 35149756 - 35149796
Alignment:
Q  353 tttcttgataaattcttgataaaaactctttagagaaataa 393  Q
    ||||||||||||||||||||||||||||| |||| ||||||    
T  35149756 tttcttgataaattcttgataaaaactctctagataaataa 35149796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 38
Target Start/End: Original strand, 43571151 - 43571186
Alignment:
Q  3 ggtgtaggaataaagggtgttcatgtaatattttcc 38  Q
    |||||||||||||||||||||||||||| |||||||    
T  43571151 ggtgtaggaataaagggtgttcatgtaacattttcc 43571186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 387
Target Start/End: Complemental strand, 26469960 - 26469926
Alignment:
Q  353 tttcttgataaattcttgataaaaactctttagag 387  Q
    ||||||||||||||||||||||||||||| |||||    
T  26469960 tttcttgataaattcttgataaaaactctctagag 26469926  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 5489809 - 5489776
Alignment:
Q  5 tgtaggaataaagggtgttcatgtaatattttcc 38  Q
    |||||||||||||||||||||||||| |||||||    
T  5489809 tgtaggaataaagggtgttcatgtaacattttcc 5489776  T

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Target: scaffold0119 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 38
Target Start/End: Complemental strand, 720 - 685
Alignment:
Q  3 ggtgtaggaataaagggtgttcatgtaatattttcc 38  Q
    |||||||||||||||||||||||||||| |||||||    
T  720 ggtgtaggaataaagggtgttcatgtaacattttcc 685  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 392
Target Start/End: Complemental strand, 46297629 - 46297590
Alignment:
Q  353 tttcttgataaattcttgataaaaactctttagagaaata 392  Q
    ||||||||||||||||||||||||||||| |||| |||||    
T  46297629 tttcttgataaattcttgataaaaactctctagataaata 46297590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 5810987 - 5811024
Alignment:
Q  1 ggggtgtaggaataaagggtgttcatgtaatattttcc 38  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  5810987 ggggtgtaggaataaagggtggtcatgtaacattttcc 5811024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 24001079 - 24001112
Alignment:
Q  5 tgtaggaataaagggtgttcatgtaatattttcc 38  Q
    |||||||||||||||||||||||||| |||||||    
T  24001079 tgtaggaataaagggtgttcatgtaacattttcc 24001112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 38160661 - 38160694
Alignment:
Q  5 tgtaggaataaagggtgttcatgtaatattttcc 38  Q
    |||||||||||||||||||||||||| |||||||    
T  38160661 tgtaggaataaagggtgttcatgtaacattttcc 38160694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 42538498 - 42538531
Alignment:
Q  5 tgtaggaataaagggtgttcatgtaatattttcc 38  Q
    |||||||||||||||||||||||||| |||||||    
T  42538498 tgtaggaataaagggtgttcatgtaacattttcc 42538531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 41861710 - 41861674
Alignment:
Q  2 gggtgtaggaataaagggtgttcatgtaatattttcc 38  Q
    ||||||| ||||||||||||||||||||| |||||||    
T  41861710 gggtgtatgaataaagggtgttcatgtaacattttcc 41861674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 38
Target Start/End: Original strand, 7273400 - 7273435
Alignment:
Q  3 ggtgtaggaataaagggtgttcatgtaatattttcc 38  Q
    |||||||||||||||||||||||||||| |||||||    
T  7273400 ggtgtaggaataaagggtgttcatgtaacattttcc 7273435  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 38
Target Start/End: Original strand, 26670074 - 26670109
Alignment:
Q  3 ggtgtaggaataaagggtgttcatgtaatattttcc 38  Q
    |||||||||||||||||||||||||||| |||||||    
T  26670074 ggtgtaggaataaagggtgttcatgtaacattttcc 26670109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 392
Target Start/End: Original strand, 32871845 - 32871884
Alignment:
Q  353 tttcttgataaattcttgataaaaactctttagagaaata 392  Q
    ||||||||||||||||||||||||||||| |||| |||||    
T  32871845 tttcttgataaattcttgataaaaactctctagataaata 32871884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 9698400 - 9698433
Alignment:
Q  5 tgtaggaataaagggtgttcatgtaatattttcc 38  Q
    |||||||||||||||||||||||||| |||||||    
T  9698400 tgtaggaataaagggtgttcatgtaacattttcc 9698433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 26466836 - 26466799
Alignment:
Q  1 ggggtgtaggaataaagggtgttcatgtaatattttcc 38  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  26466836 ggggtgtaggaataaagggtgtttatgtaacattttcc 26466799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 30014376 - 30014343
Alignment:
Q  5 tgtaggaataaagggtgttcatgtaatattttcc 38  Q
    |||||||||||||||||||||||||| |||||||    
T  30014376 tgtaggaataaagggtgttcatgtaacattttcc 30014343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 381
Target Start/End: Complemental strand, 34713517 - 34713489
Alignment:
Q  353 tttcttgataaattcttgataaaaactct 381  Q
    |||||||||||||||||||||||||||||    
T  34713517 tttcttgataaattcttgataaaaactct 34713489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 14251 - 14288
Alignment:
Q  1 ggggtgtaggaataaagggtgttcatgtaatattttcc 38  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  14251 ggggtgtagaaataaagggtgttcatgtaacattttcc 14288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 24579 - 24616
Alignment:
Q  1 ggggtgtaggaataaagggtgttcatgtaatattttcc 38  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  24579 ggggtgtagaaataaagggtgttcatgtaacattttcc 24616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 112688 - 112656
Alignment:
Q  5 tgtaggaataaagggtgttcatgtaatattttc 37  Q
    |||||||||||||||||||||||||| ||||||    
T  112688 tgtaggaataaagggtgttcatgtaacattttc 112656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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