View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1833_low_8 (Length: 365)
Name: NF1833_low_8
Description: NF1833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1833_low_8 |
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| [»] scaffold1961 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 14 - 346
Target Start/End: Complemental strand, 15197376 - 15197044
Alignment:
| Q |
14 |
aagaaaaagaagaagaataacatcaagaagaataaggatgtttcgatagaggctttcaaggacatgagtgctgaatatgatgacaaggcttggaaaattc |
113 |
Q |
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||||| ||||||||||||||||| |||||||| ||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
15197376 |
aagaagaagaagaagaataacatgaagaagaagaaggatgttcctatagaggctttcaaggacatgagtgctgaatatggtgacaaggcttggaacattc |
15197277 |
T |
|
| Q |
114 |
tggaacatgcatttcgtcggatatacaatcacaacgctaggaatattctcagttttgaagagctttacaggttctttctcatcattcttatttgtgttca |
213 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15197276 |
tggaacatgcaattcgtcggatatacaatcacaacgctaggaatattctcagttttgaagagctttacaggttctttctcatcattcttatttgtgttca |
15197177 |
T |
|
| Q |
214 |
ctgtgcctgtcttttaaaatattatcattggatttagggttttttaaattatcaagttggtaatgatgatgatatgtctattgttgttagcttattttca |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15197176 |
ctgtgcctgtcttttaaaatattatcattggatttagggttttttaaattatcaagttggtaatgatgatgatatgtctattgttgttagcttattttca |
15197077 |
T |
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| Q |
314 |
taattaagtacttggatttaaggttgtattcct |
346 |
Q |
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|||||||||| |||||||||||||||||||||| |
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| T |
15197076 |
taattaagtagttggatttaaggttgtattcct |
15197044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 14 - 346
Target Start/End: Complemental strand, 15217794 - 15217462
Alignment:
| Q |
14 |
aagaaaaagaagaagaataacatcaagaagaataaggatgtttcgatagaggctttcaaggacatgagtgctgaatatgatgacaaggcttggaaaattc |
113 |
Q |
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||||| ||||||||||||||||| |||||||| ||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
15217794 |
aagaagaagaagaagaataacatgaagaagaagaaggatgttcctatagaggctttcaaggacatgagtgctgaatatggtgacaaggcttggaacattc |
15217695 |
T |
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| Q |
114 |
tggaacatgcatttcgtcggatatacaatcacaacgctaggaatattctcagttttgaagagctttacaggttctttctcatcattcttatttgtgttca |
213 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15217694 |
tggaacatgcaattcgtcggatatacaatcacaacgctaggaatattctcagttttgaagagctttacaggttctttctcatcattcttatttgtgttca |
15217595 |
T |
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| Q |
214 |
ctgtgcctgtcttttaaaatattatcattggatttagggttttttaaattatcaagttggtaatgatgatgatatgtctattgttgttagcttattttca |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15217594 |
ctgtgcctgtcttttaaaatattatcattggatttagggttttttaaattatcaagttggtaatgatgatgatatgtctattgttgttagcttattttca |
15217495 |
T |
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| Q |
314 |
taattaagtacttggatttaaggttgtattcct |
346 |
Q |
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|||||||||| |||||||||||||||||||||| |
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| T |
15217494 |
taattaagtagttggatttaaggttgtattcct |
15217462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1961 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: scaffold1961
Description:
Target: scaffold1961; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 110 - 212
Target Start/End: Complemental strand, 1204 - 1102
Alignment:
| Q |
110 |
attctggaacatgcatttcgtcggatatacaatcacaacgctaggaatattctcagttttgaagagctttacaggttctttctcatcattcttatttgtg |
209 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
1204 |
attctggaacatgcaattcgtcggatatacaatcacaacgctaggaatattctcagtttttaagagctttacaggttctttctcatcattctcatttgtg |
1105 |
T |
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| Q |
210 |
ttc |
212 |
Q |
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||| |
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| T |
1104 |
ttc |
1102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 84 - 200
Target Start/End: Complemental strand, 14752205 - 14752092
Alignment:
| Q |
84 |
ctgaatatgatgacaaggcttggaaaattctggaacatgcatttcgtcggatatacaatcacaacgctaggaatattctcagttttgaagagctttacag |
183 |
Q |
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||||||||| ||||||| ||||||| ||||| ||||||||||||| || |||||||||||||||| |||| | ||||||||||||||||||| |||| |
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| T |
14752205 |
ctgaatatggtgacaagacttggaacattcttgaacatgcatttcatcagatatacaatcacaacactag---tggtctcagttttgaagagcttcacag |
14752109 |
T |
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| Q |
184 |
gttctttctcatcattc |
200 |
Q |
| |
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|| |||||||||||||| |
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| T |
14752108 |
gtactttctcatcattc |
14752092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 82 - 201
Target Start/End: Complemental strand, 14760341 - 14760225
Alignment:
| Q |
82 |
tgctgaatatgatgacaaggcttggaaaattctggaacatgcatttcgtcggatatacaatcacaacgctaggaatattctcagttttgaagagctttac |
181 |
Q |
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|||||| |||| ||||||| ||||||| || ||||| |||||| ||| | ||||||| ||||||| ||||||||| ||||||||||||||||||| |
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| T |
14760341 |
tgctgattatgctgacaagacttggaacatcctggagcatgcaattcatgacttatacaaccacaacgttaggaatat---cagttttgaagagctttac |
14760245 |
T |
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| Q |
182 |
aggttctttctcatcattct |
201 |
Q |
| |
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|||||||||||||| ||||| |
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| T |
14760244 |
aggttctttctcatgattct |
14760225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 82 - 195
Target Start/End: Original strand, 17568184 - 17568294
Alignment:
| Q |
82 |
tgctgaatatgatgacaaggcttggaaaattctggaacatgcatttcgtcggatatacaatcacaacgctaggaatattctcagttttgaagagctttac |
181 |
Q |
| |
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|||||| |||| ||||||| ||||||| || ||||| |||||| ||| | ||||||| ||||||| ||||||||| ||||||||||||||||||| |
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| T |
17568184 |
tgctgattatgctgacaagacttggaacatcctggagcatgcaattcatgacttatacaaccacaacgttaggaatat---cagttttgaagagctttac |
17568280 |
T |
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| Q |
182 |
aggttctttctcat |
195 |
Q |
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|||||||||||||| |
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| T |
17568281 |
aggttctttctcat |
17568294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 193
Target Start/End: Complemental strand, 15884444 - 15884339
Alignment:
| Q |
85 |
tgaatatgatgacaaggcttggaaaattctggaacatgcatttcgtcggatatacaatcacaacgctag-gaatattctcagttttgaagagctttacag |
183 |
Q |
| |
|
||||| || ||||| | ||||||| ||||| ||| ||||| ||| || |||||||||||||||| || | || || ||||||||||||||||||||| |
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|
| T |
15884444 |
tgaatttgctgacatgacttggaacattcttgaagatgcaattcatcagatatacaatcacaactcttgtgatta----cagttttgaagagctttacag |
15884349 |
T |
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| Q |
184 |
gttctttctc |
193 |
Q |
| |
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|||||||||| |
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| T |
15884348 |
gttctttctc |
15884339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 160 - 199
Target Start/End: Complemental strand, 17622478 - 17622439
Alignment:
| Q |
160 |
tctcagttttgaagagctttacaggttctttctcatcatt |
199 |
Q |
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||||| ||||||||||||| |||||||||||||||||||| |
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| T |
17622478 |
tctcaattttgaagagcttcacaggttctttctcatcatt |
17622439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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