View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18341_high_16 (Length: 204)
Name: NF18341_high_16
Description: NF18341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18341_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 53007971 - 53008012
Alignment:
| Q |
1 |
cctgagtcccacccactcctatgcagttgctgaaaaatcatg |
42 |
Q |
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| T |
53007971 |
cctgagtcccacccactcctatgcagttgctgaaaaatcatg |
53008012 |
T |
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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 204
Target Start/End: Original strand, 53008010 - 53008043
Alignment:
| Q |
171 |
atgagcacaacctaggccattactctggacttga |
204 |
Q |
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| T |
53008010 |
atgagcacaacctaggccattactctggacttga |
53008043 |
T |
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