View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18341_high_7 (Length: 337)

Name: NF18341_high_7
Description: NF18341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18341_high_7
NF18341_high_7
[»] chr5 (1 HSPs)
chr5 (43-309)||(41968926-41969181)
[»] chr1 (2 HSPs)
chr1 (163-309)||(3722450-3722597)
chr1 (173-307)||(32953608-32953742)
[»] chr8 (2 HSPs)
chr8 (228-309)||(35739690-35739771)
chr8 (237-309)||(37080806-37080878)
[»] chr7 (1 HSPs)
chr7 (170-309)||(7805573-7805712)
[»] chr3 (1 HSPs)
chr3 (43-129)||(1236150-1236237)
[»] chr2 (1 HSPs)
chr2 (200-307)||(36033683-36033789)
[»] scaffold0011 (1 HSPs)
scaffold0011 (228-309)||(228870-228951)


Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 43 - 309
Target Start/End: Complemental strand, 41969181 - 41968926
Alignment:
Q  43 accttcgtccataattttatttttggatataagtttttcctttaaatatgtgaatcacaagtataatatttataaacttgatcaagggttttccgcgatt 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41969181 accttcgtccataattttatttttggatataagtttttcctttaaatatgtgaatcacaagtataatatttataaacttgatcaagggttttccgcgatt 41969082  T
Q  143 tcgattgttatggatgctgccaaaacattgcacaattaccctcaccatttactcccactcacctcactttattcgttataggttcttctttctcacttct 242  Q
    ||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||    
T  41969081 tcgattgttaccggtgctgccaaaacattgcacaattaccctcaccatttactcccactcacctcactttattcgttataggttctt-----------ct 41968993  T
Q  243 tttccaatgtaacaatactcaagcatggaaccacaaattcataaacttaaaaaatctcatctctaaa 309  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  41968992 tttccaatgtaacaatactcaagcatggaaccacgaattcataaacttaaaaaatctcatctataaa 41968926  T

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Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 163 - 309
Target Start/End: Original strand, 3722450 - 3722597
Alignment:
Q  163 caaaacattgcacaattaccctcaccatttactcccactcacctcactttattcgttataggttcttctttctcacttcttttccaatgtaacaatactc 262  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||  |||      
T  3722450 caaaacattgcacaattaccctcaccatttcctctcactcacctcacattattctttataggttcttctttctcacttcttttccaatgtcacggtaccg 3722549  T
Q  263 aagcatggaaccacaaattcataaac-ttaaaaaatctcatctctaaa 309  Q
    ||  |||||||||| ||||||||||| | |||||||||||||||||||    
T  3722550 aattatggaaccactaattcataaacataaaaaaatctcatctctaaa 3722597  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 307
Target Start/End: Complemental strand, 32953742 - 32953608
Alignment:
Q  173 cacaattaccctcaccatttactcccactcacctcactttattcgttataggttcttctttctcacttcttttccaatgtaacaatactcaagcatggaa 272  Q
    |||||||||| |||||| |||||| |||||||| |||||||||| ||  ||||| | |||||| |||| |||| |||||| |||||| | || || | ||    
T  32953742 cacaattaccttcaccagttactctcactcaccccactttattctttccaggttttactttcttacttatttttcaatgtcacaatattgaaacaagcaa 32953643  T
Q  273 ccacaaattcataaacttaaaaaatctcatctcta 307  Q
    | || |||||||||||   ||||||||||||||||    
T  32953642 caacgaattcataaacaccaaaaatctcatctcta 32953608  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 228 - 309
Target Start/End: Complemental strand, 35739771 - 35739690
Alignment:
Q  228 ttctttctcacttcttttccaatgtaacaatactcaagcatggaaccacaaattcataaacttaaaaaatctcatctctaaa 309  Q
    |||||||| |||||||||||||||| |||  ||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  35739771 ttctttctaacttcttttccaatgtcacagaactgaagcatggaaccacaaattcataaacataaaaaatctcatctctaaa 35739690  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 237 - 309
Target Start/End: Original strand, 37080806 - 37080878
Alignment:
Q  237 acttcttttccaatgtaacaatactcaagcatggaaccacaaattcataaacttaaaaaatctcatctctaaa 309  Q
    |||||||||||| ||| |||||||| ||||| | ||||||||||||||||||   || |||||||||||||||    
T  37080806 acttcttttccattgtcacaatactgaagcaagcaaccacaaattcataaacaccaataatctcatctctaaa 37080878  T

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Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 170 - 309
Target Start/End: Original strand, 7805573 - 7805712
Alignment:
Q  170 ttgcacaattaccctcaccatttactcccactcacctcactttattcgttataggttcttctttctcacttcttttccaatgtaacaatactcaagcatg 269  Q
    |||||||||||||||||||| || |||  |||||||||||||||||  ||  |||||||||||||  |||||||||||||||| || ||||| ||||| |    
T  7805573 ttgcacaattaccctcaccactttctctaactcacctcactttattatttcgaggttcttctttcaaacttcttttccaatgtcacgatactgaagcaag 7805672  T
Q  270 gaaccacaaattcataaacttaaaaaatctcatctctaaa 309  Q
     ||| || |||||||||||   ||||||| ||||||||||    
T  7805673 caactacgaattcataaacaccaaaaatcccatctctaaa 7805712  T

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Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 43 - 129
Target Start/End: Complemental strand, 1236237 - 1236150
Alignment:
Q  43 accttcgtccataattttatttttggatataagttttt-cctttaaatatgtgaatcacaagtataatatttataaacttgatcaagg 129  Q
    ||||||||| ||||||||||||||| |||||| ||||| |||||||| |||||||||||||||||||||||||| |||||||| ||||    
T  1236237 accttcgtctataattttatttttgtatataaattttttcctttaaacatgtgaatcacaagtataatatttattaacttgatgaagg 1236150  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 307
Target Start/End: Complemental strand, 36033789 - 36033683
Alignment:
Q  200 ctcacctcactttattcgttataggttcttctttctcacttcttttccaatgtaacaatactcaagcatggaaccacaaattcataaacttaaaaaatct 299  Q
    |||||| |||||||||| ||  ||||||| ||| |||||||||||| |||||| ||| |||| ||||| | |||||| |||||||||||   ||||||||    
T  36033789 ctcaccccactttattctttccaggttctacttactcacttctttttcaatgtcacattactgaagcaagcaaccacgaattcataaac-acaaaaatct 36033691  T
Q  300 catctcta 307  Q
    ||||||||    
T  36033690 catctcta 36033683  T

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Target: scaffold0011 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 309
Target Start/End: Original strand, 228870 - 228951
Alignment:
Q  228 ttctttctcacttcttttccaatgtaacaatactcaagcatggaaccacaaattcataaacttaaaaaatctcatctctaaa 309  Q
    |||||||||| |||||||||||||| ||  |||| ||||| | ||||||  ||||||||||   ||| ||||||||||||||    
T  228870 ttctttctcatttcttttccaatgtcactgtactaaagcaagcaaccacggattcataaacaccaaatatctcatctctaaa 228951  T

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