View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18341_low_10 (Length: 298)

Name: NF18341_low_10
Description: NF18341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18341_low_10
NF18341_low_10
[»] chr7 (10 HSPs)
chr7 (1-292)||(39577946-39578237)
chr7 (156-292)||(39359690-39359826)
chr7 (156-292)||(39551714-39551850)
chr7 (169-292)||(39345145-39345268)
chr7 (173-292)||(39592590-39592709)
chr7 (156-292)||(39568561-39568697)
chr7 (156-288)||(39625169-39625300)
chr7 (169-292)||(39333866-39333989)
chr7 (173-292)||(39542515-39542634)
chr7 (1-61)||(39592433-39592493)
[»] chr2 (3 HSPs)
chr2 (172-287)||(44237170-44237285)
chr2 (172-287)||(44214202-44214317)
chr2 (172-287)||(44226372-44226487)
[»] chr4 (3 HSPs)
chr4 (172-289)||(2901734-2901851)
chr4 (172-284)||(2872979-2873091)
chr4 (176-289)||(2883176-2883289)
[»] chr1 (1 HSPs)
chr1 (171-282)||(2152543-2152654)


Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 39577946 - 39578237
Alignment:
Q  1 atctggatctgggataatgtttctctccttctctcttctagatatctcttctagcatatctgcattttaccatagatattttccattaaatttgtaatca 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39577946 atctggatctgggataatgtttctctccttttctcttctagatatctcttctagcatatctgcattttaccatagatattttccattaaatttgtaatca 39578045  T
Q  101 cgctgagatattttccattgagatggaacatttagcaaaagatgcaatgccgtgcactaaccacatctaggtccaacaccttggaatcttgctgagaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39578046 cgctgagatattttccattgagatggaacatttagcaaaagatgcaatgccgtgcactaaccacatctaggtccaacaccttggaatcttgctgagaatt 39578145  T
Q  201 ccaaagtttctctaactgtcaattctccaatgtgaagatcgttttgactgacataagcagcagttctttgaggtacaaactcattcatctca 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39578146 ccaaagtttctctaactgtcaattctccaatgtgaagatcgttttgactgacataagcagcagttctttgaggtacaaactcattcatctca 39578237  T

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Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 156 - 292
Target Start/End: Complemental strand, 39359826 - 39359690
Alignment:
Q  156 actaaccacatctaggtccaacaccttggaatcttgctgagaattccaaagtttctctaactgtcaattctccaatgtgaagatcgttttgactgacata 255  Q
    |||||||| | | ||||||||| ||||||| ||| ||||||||  |||| ||||||||||| |||| |||||||||||||||||| ||||||   |||||    
T  39359826 actaaccataacgaggtccaactccttggactctagctgagaaggccaaggtttctctaacagtcatttctccaatgtgaagatcattttgatccacata 39359727  T
Q  256 agcagcagttctttgaggtacaaactcattcatctca 292  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  39359726 agcagcagttctttggggtacaaactcactcatctca 39359690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 156 - 292
Target Start/End: Original strand, 39551714 - 39551850
Alignment:
Q  156 actaaccacatctaggtccaacaccttggaatcttgctgagaattccaaagtttctctaactgtcaattctccaatgtgaagatcgttttgactgacata 255  Q
    |||||||| | | ||| ||||| |||||||  |||||||||||  |||| ||||||||||| |||| |||||||||||||||||| ||||||   |||||    
T  39551714 actaaccataacgaggcccaactccttggacccttgctgagaaagccaaggtttctctaacagtcatttctccaatgtgaagatcattttgatccacata 39551813  T
Q  256 agcagcagttctttgaggtacaaactcattcatctca 292  Q
    |||||||||||||||||| ||||||||||||||||||    
T  39551814 agcagcagttctttgaggcacaaactcattcatctca 39551850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 169 - 292
Target Start/End: Complemental strand, 39345268 - 39345145
Alignment:
Q  169 aggtccaacaccttggaatcttgctgagaattccaaagtttctctaactgtcaattctccaatgtgaagatcgttttgactgacataagcagcagttctt 268  Q
    ||||||||| ||||||| |||||| |||||  |||| ||||||||||| ||||||||||||||||||||||| ||||||   ||||||||||||||||||    
T  39345268 aggtccaactccttggactcttgccgagaaggccaatgtttctctaacagtcaattctccaatgtgaagatcattttgatccacataagcagcagttctt 39345169  T
Q  269 tgaggtacaaactcattcatctca 292  Q
    || || ||||| ||| ||||||||    
T  39345168 tgggggacaaattcactcatctca 39345145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 173 - 292
Target Start/End: Original strand, 39592590 - 39592709
Alignment:
Q  173 ccaacaccttggaatcttgctgagaattccaaagtttctctaactgtcaattctccaatgtgaagatcgttttgactgacataagcagcagttctttgag 272  Q
    ||||| ||||||| |||||| |||||  |||  |||||||| || ||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |    
T  39592590 ccaacgccttggactcttgcggagaaggccatcgtttctctgacagtcaattctccaaggtgaagatcattttgactgacataagcagcagttctttggg 39592689  T
Q  273 gtacaaactcattcatctca 292  Q
    ||||||| || |||||||||    
T  39592690 gtacaaattctttcatctca 39592709  T

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Target: chr7; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 156 - 292
Target Start/End: Original strand, 39568561 - 39568697
Alignment:
Q  156 actaaccacatctaggtccaacaccttggaatcttgctgagaattccaaagtttctctaactgtcaattctccaatgtgaagatcgttttgactgacata 255  Q
    |||||||| | | ||||||||| ||||||| || |||||||||  |||| |||||||| ||||||| |||||||||||||||||| ||||||   |||||    
T  39568561 actaaccataacgaggtccaactccttggactcgtgctgagaaggccaaggtttctcttactgtcatttctccaatgtgaagatcattttgatccacata 39568660  T
Q  256 agcagcagttctttgaggtacaaactcattcatctca 292  Q
     |||||||||| ||| || ||||||||| ||||||||    
T  39568661 tgcagcagttcgttgggggacaaactcactcatctca 39568697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 156 - 288
Target Start/End: Original strand, 39625169 - 39625300
Alignment:
Q  156 actaaccacatctaggtccaacaccttggaatcttgctgagaattccaaagtttctctaactgtcaattctccaatgtgaagatcgttttgactgacata 255  Q
    |||||||| ||| ||||||||| ||||| | ||||||||| ||  |||| |||||||| || |||||||| |||| ||||  ||| ||||||||||||||    
T  39625169 actaaccatatcgaggtccaactccttgaactcttgctgaaaaggccaaggtttctctgacagtcaattc-ccaaggtgagtatcattttgactgacata 39625267  T
Q  256 agcagcagttctttgaggtacaaactcattcat 288  Q
    ||||||||||||||| || ||||||||||||||    
T  39625268 agcagcagttctttgtggcacaaactcattcat 39625300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 169 - 292
Target Start/End: Complemental strand, 39333989 - 39333866
Alignment:
Q  169 aggtccaacaccttggaatcttgctgagaattccaaagtttctctaactgtcaattctccaatgtgaagatcgttttgactgacataagcagcagttctt 268  Q
    ||||||||| ||||||| |||||| |||||  |||  ||||||||||| ||||||||||||||||||||||| ||||||   ||||| ||||||||||||    
T  39333989 aggtccaactccttggactcttgccgagaaggccagtgtttctctaacagtcaattctccaatgtgaagatcattttgatccacatatgcagcagttctt 39333890  T
Q  269 tgaggtacaaactcattcatctca 292  Q
    || || ||||| ||| ||||||||    
T  39333889 tgggggacaaattcactcatctca 39333866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 173 - 292
Target Start/End: Original strand, 39542515 - 39542634
Alignment:
Q  173 ccaacaccttggaatcttgctgagaattccaaagtttctctaactgtcaattctccaatgtgaagatcgttttgactgacataagcagcagttctttgag 272  Q
    ||||| |||||||  ||||| |||||  |||| ||||||||||| |||| ||||||||||||||| || ||||||   |||||||| ||||||||||| |    
T  39542515 ccaactccttggacccttgccgagaaggccaaggtttctctaacagtcatttctccaatgtgaaggtcattttgatccacataagcggcagttctttggg 39542614  T
Q  273 gtacaaactcattcatctca 292  Q
    | |||||||||  |||||||    
T  39542615 ggacaaactcacccatctca 39542634  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 39592433 - 39592493
Alignment:
Q  1 atctggatctgggataatgtttctctccttctctcttctagatatctcttctagcatatct 61  Q
    ||||||||| |||||||||||| |||| || ||||||||| | | |||| |||||||||||    
T  39592433 atctggatcagggataatgtttttctctttttctcttctacacacctctgctagcatatct 39592493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 172 - 287
Target Start/End: Original strand, 44237170 - 44237285
Alignment:
Q  172 tccaacaccttggaatcttgctgagaattccaaagtttctctaactgtcaattctccaatgtgaagatcgttttgactgacataagcagcagttctttga 271  Q
    |||||| |||||| |||||||||||||  |||| |||||||| || |||| ||||||||| |||| ||| | ||| |||| |||||| ||||||||||||    
T  44237170 tccaactccttggcatcttgctgagaaagccaaggtttctctcacagtcatttctccaatatgaacatcatgttggctgatataagccgcagttctttga 44237269  T
Q  272 ggtacaaactcattca 287  Q
    ||||||||||| ||||    
T  44237270 ggtacaaactcgttca 44237285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 172 - 287
Target Start/End: Original strand, 44214202 - 44214317
Alignment:
Q  172 tccaacaccttggaatcttgctgagaattccaaagtttctctaactgtcaattctccaatgtgaagatcgttttgactgacataagcagcagttctttga 271  Q
    |||||| |||||| | |||||||||||  | || ||||| || || |||| |||||||||||||| ||| |  || |||| |||||||||||||||||||    
T  44214202 tccaactccttggcaccttgctgagaaagctaaggtttccctcacagtcatttctccaatgtgaacatcatgctggctgatataagcagcagttctttga 44214301  T
Q  272 ggtacaaactcattca 287  Q
    ||||||||||||||||    
T  44214302 ggtacaaactcattca 44214317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 172 - 287
Target Start/End: Original strand, 44226372 - 44226487
Alignment:
Q  172 tccaacaccttggaatcttgctgagaattccaaagtttctctaactgtcaattctccaatgtgaagatcgttttgactgacataagcagcagttctttga 271  Q
    |||||| |||||| | |||||||||||  |||| ||||| || || |||| ||||||||| |||| ||| | ||| || | ||| |||||||||||||||    
T  44226372 tccaactccttggcaccttgctgagaaagccaaggtttccctcacagtcatttctccaatatgaacatcatgttggcttatataggcagcagttctttga 44226471  T
Q  272 ggtacaaactcattca 287  Q
    ||||||||||||||||    
T  44226472 ggtacaaactcattca 44226487  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 172 - 289
Target Start/End: Original strand, 2901734 - 2901851
Alignment:
Q  172 tccaacaccttggaatcttgctgagaattccaaagtttctctaactgtcaattctccaatgtgaagatcgttttgactgacataagcagcagttctttga 271  Q
    |||||| |||||| | |||||||||||  |||| ||||| ||||| |||| ||||||||| |||| ||| | |||||| | ||| |||||||||||||||    
T  2901734 tccaacgccttggcaccttgctgagaaagccaatgtttccctaacagtcatttctccaatatgaacatcatgttgactaatatatgcagcagttctttga 2901833  T
Q  272 ggtacaaactcattcatc 289  Q
    |||||||| |||| ||||    
T  2901834 ggtacaaattcatccatc 2901851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 172 - 284
Target Start/End: Complemental strand, 2873091 - 2872979
Alignment:
Q  172 tccaacaccttggaatcttgctgagaattccaaagtttctctaactgtcaattctccaatgtgaagatcgttttgactgacataagcagcagttctttga 271  Q
    |||||| |||||| | |||||||||||  |||| ||||| ||||| |||| ||||||||| |||| ||| | |||||| | ||| |||||||||||||||    
T  2873091 tccaactccttggcaccttgctgagaaagccaatgtttccctaacagtcatttctccaatatgaacatcatgttgactaatatatgcagcagttctttga 2872992  T
Q  272 ggtacaaactcat 284  Q
    |||||||| ||||    
T  2872991 ggtacaaattcat 2872979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 289
Target Start/End: Complemental strand, 2883289 - 2883176
Alignment:
Q  176 acaccttggaatcttgctgagaattccaaagtttctctaactgtcaattctccaatgtgaagatcgttttgactgacataagcagcagttctttgaggta 275  Q
    ||||||||| | |||||||||||  |||| ||||| || || |||| ||||||||| |||| ||| | |||||| | ||| ||||||||||| |||||||    
T  2883289 acaccttggcaccttgctgagaaagccaaggtttccctcacagtcatttctccaatatgaacatcatgttgactaatatatgcagcagttctctgaggta 2883190  T
Q  276 caaactcattcatc 289  Q
    |||| |||| ||||    
T  2883189 caaattcatccatc 2883176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 282
Target Start/End: Original strand, 2152543 - 2152654
Alignment:
Q  171 gtccaacaccttggaatcttgctgagaattccaaagtttctctaactgtcaattctccaatgtgaagatcgttttgactgacataagcagcagttctttg 270  Q
    ||||||| |||||  |||||||||||||  |||  |||||||| || |||| |||||||||||||  ||| | |||||| |||||||| |  ||||||||    
T  2152543 gtccaaccccttgacatcttgctgagaaagccagtgtttctctcacagtcatttctccaatgtgattatcatattgacttacataagctgatgttctttg 2152642  T
Q  271 aggtacaaactc 282  Q
     || ||||||||    
T  2152643 tggaacaaactc 2152654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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