View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18341_low_11 (Length: 276)
Name: NF18341_low_11
Description: NF18341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18341_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 11364814 - 11364556
Alignment:
| Q |
1 |
tctgcaaaccatgcaaacaacattatatggatttctaaactcccaatataggaacgcaacaaatataatcacaagactggtgaaaattagcaagagaaaa |
100 |
Q |
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| T |
11364814 |
tctgcaaaccatgcaaacaacattatatggatttctaaactcccaatataggaacgcaacaaatataatcacaagactggtgaaaattagcaagagaaaa |
11364715 |
T |
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| Q |
101 |
cattttctgaatgctcttgagtgagttaacacccatcagaacatttgatttatacttgtnnnnnnnnncgtttgatttatacacataaagattacatgga |
200 |
Q |
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| T |
11364714 |
cattttctgaatgctcttgagtgagttaacacccatcagaacatttgatttatacttgtaaaaaaaaacgtttgatttatacacataaagattacatgga |
11364615 |
T |
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| Q |
201 |
atcatggataatagatgtcaaatgcaatttacaagatgagaaattaagctatacctatt |
259 |
Q |
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| T |
11364614 |
atcatggataatagatgtcaaatgcaatttacaagatgagaaattaagctatacctatt |
11364556 |
T |
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