View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18341_low_12 (Length: 266)

Name: NF18341_low_12
Description: NF18341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18341_low_12
NF18341_low_12
[»] chr5 (16 HSPs)
chr5 (11-243)||(8548472-8548704)
chr5 (191-250)||(8548760-8548819)
chr5 (191-243)||(8548706-8548758)
chr5 (122-182)||(1600713-1600773)
chr5 (213-250)||(8640710-8640747)
chr5 (138-182)||(8535064-8535108)
chr5 (216-250)||(1601066-1601100)
chr5 (216-250)||(8534730-8534764)
chr5 (54-97)||(8641062-8641105)
chr5 (48-167)||(9003050-9003168)
chr5 (216-250)||(8528165-8528199)
chr5 (216-250)||(9002579-9002613)
chr5 (55-100)||(1600667-1600712)
chr5 (138-178)||(8528501-8528541)
chr5 (37-89)||(8643888-8643940)
chr5 (214-246)||(8677580-8677612)
[»] chr1 (1 HSPs)
chr1 (109-182)||(5130336-5130408)
[»] chr7 (1 HSPs)
chr7 (216-250)||(48362528-48362562)
[»] chr4 (1 HSPs)
chr4 (216-250)||(9442326-9442360)


Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 11 - 243
Target Start/End: Original strand, 8548472 - 8548704
Alignment:
Q  11 caaagggtcatgtgtgaattttttgtgttactgcttatatttaaacttcctattttggcattctatttggataaaggaaggcttgttgttttgtacagat 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  8548472 caaagggtcatgtgtgaattttttgtgttactgcttatatttaaacttcctattttggcattctatttggataaaggaaggcttgttgttaagtacagat 8548571  T
Q  111 cttctcacttaaggttatgatgatttctcaatcatttgcttttacaactaatatatttatggtgttgtttatttccttactttaattacatagctatcct 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8548572 cttctcacttaaggttatgatgatttctcaatcatttgcttttacaactaatatatttatggtgttgtttatttccttactttaattacatagctatcct 8548671  T
Q  211 ttcctaatattgttttaatttatataggtgtgc 243  Q
    |||||||||||||||||||||||||||||||||    
T  8548672 ttcctaatattgttttaatttatataggtgtgc 8548704  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 8548760 - 8548819
Alignment:
Q  191 tttaattacatagctatcctttcctaatattgttttaatttatataggtgtgcaaagttt 250  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  8548760 tttaattacatagctatcctttcctaatattgttttaatttatataggtgtgtaaagttt 8548819  T

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Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 191 - 243
Target Start/End: Original strand, 8548706 - 8548758
Alignment:
Q  191 tttaattacatagctatcctttcctaatattgttttaatttatataggtgtgc 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8548706 tttaattacatagctatcctttcctaatattgttttaatttatataggtgtgc 8548758  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 122 - 182
Target Start/End: Original strand, 1600713 - 1600773
Alignment:
Q  122 aggttatgatgatttctcaatcatttgcttttacaactaatatatttatggtgttgtttat 182  Q
    ||||| ||||| || | |||||| |||||||||||||||||||||||||||||||||||||    
T  1600713 aggttgtgatgtttccgcaatcaattgcttttacaactaatatatttatggtgttgtttat 1600773  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 250
Target Start/End: Complemental strand, 8640747 - 8640710
Alignment:
Q  213 cctaatattgttttaatttatataggtgtgcaaagttt 250  Q
    ||||||||||||||||||||||||||||||||||||||    
T  8640747 cctaatattgttttaatttatataggtgtgcaaagttt 8640710  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 8535108 - 8535064
Alignment:
Q  138 tcaatcatttgcttttacaactaatatatttatggtgttgtttat 182  Q
    ||||||||||||||||||||||||||||||||||  |||||||||    
T  8535108 tcaatcatttgcttttacaactaatatatttatgaagttgtttat 8535064  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 216 - 250
Target Start/End: Original strand, 1601066 - 1601100
Alignment:
Q  216 aatattgttttaatttatataggtgtgcaaagttt 250  Q
    |||||||||||||||||||||||||||||||||||    
T  1601066 aatattgttttaatttatataggtgtgcaaagttt 1601100  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 216 - 250
Target Start/End: Complemental strand, 8534764 - 8534730
Alignment:
Q  216 aatattgttttaatttatataggtgtgcaaagttt 250  Q
    |||||||||||||||||||||||||||||||||||    
T  8534764 aatattgttttaatttatataggtgtgcaaagttt 8534730  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 97
Target Start/End: Complemental strand, 8641105 - 8641062
Alignment:
Q  54 aacttcctattttggcattctatttggataaaggaaggcttgtt 97  Q
    |||||||| |||||| ||||||||||||||||||||| ||||||    
T  8641105 aacttcctgttttggtattctatttggataaaggaagacttgtt 8641062  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 167
Target Start/End: Complemental strand, 9003168 - 9003050
Alignment:
Q  48 tatttaaacttcctattttggcattctatttggataaaggaaggcttgttgttttgtacagatcttctcacttaaggttatgatgatttctcaatcattt 147  Q
    ||||| |||||||| ||||  ||||||||||||| ||||||||| ||||||||   || ||||||  |||| ||||||| | ||| ||  ||||||| ||    
T  9003168 tattttaacttccttttttc-cattctatttggagaaaggaaggtttgttgttacctatagatctcatcacctaaggttgtcatgtttgatcaatcaatt 9003070  T
Q  148 gcttttacaactaatatatt 167  Q
    | ||||||||||||| ||||    
T  9003069 gattttacaactaatctatt 9003050  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 250
Target Start/End: Complemental strand, 8528199 - 8528165
Alignment:
Q  216 aatattgttttaatttatataggtgtgcaaagttt 250  Q
    |||||||||||||||| ||||||||||||||||||    
T  8528199 aatattgttttaatttctataggtgtgcaaagttt 8528165  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 250
Target Start/End: Complemental strand, 9002613 - 9002579
Alignment:
Q  216 aatattgttttaatttatataggtgtgcaaagttt 250  Q
    ||||||||| |||||||||||||||||||||||||    
T  9002613 aatattgttgtaatttatataggtgtgcaaagttt 9002579  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 100
Target Start/End: Original strand, 1600667 - 1600712
Alignment:
Q  55 acttcctattttggcattctatttggataaaggaaggcttgttgtt 100  Q
    ||||||||||||| |||||| |||||| |||||||| |||||||||    
T  1600667 acttcctattttgccattctgtttggagaaaggaagacttgttgtt 1600712  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 178
Target Start/End: Complemental strand, 8528541 - 8528501
Alignment:
Q  138 tcaatcatttgcttttacaactaatatatttatggtgttgt 178  Q
    ||||||||||||||| ||| |||||||||||||| ||||||    
T  8528541 tcaatcatttgctttcacagctaatatatttatgatgttgt 8528501  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 8643940 - 8643888
Alignment:
Q  37 gttactgcttatatttaaacttcctattttggcattctatttggataaaggaa 89  Q
    |||||| |||| || | ||||||||||||||||||| |||||||| |||||||    
T  8643940 gttactacttacatgttaacttcctattttggcattttatttggagaaaggaa 8643888  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 8677612 - 8677580
Alignment:
Q  214 ctaatattgttttaatttatataggtgtgcaaa 246  Q
    ||||||||||||||||| |||||||||||||||    
T  8677612 ctaatattgttttaattgatataggtgtgcaaa 8677580  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 5130408 - 5130336
Alignment:
Q  109 atcttctcacttaaggttatgatgatttc-tcaatcatttgcttttacaactaatatatttatggtgttgtttat 182  Q
    |||||||||||||||||| ||||  |||| ||||||| ||||||| ||||||||| |||| ||||||||||||||    
T  5130408 atcttctcacttaaggttgtgat--tttcatcaatcaattgctttcacaactaatctattgatggtgttgtttat 5130336  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 250
Target Start/End: Original strand, 48362528 - 48362562
Alignment:
Q  216 aatattgttttaatttatataggtgtgcaaagttt 250  Q
    ||||||| |||||||||||||||||||||||||||    
T  48362528 aatattggtttaatttatataggtgtgcaaagttt 48362562  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 250
Target Start/End: Complemental strand, 9442360 - 9442326
Alignment:
Q  216 aatattgttttaatttatataggtgtgcaaagttt 250  Q
    |||||||||||||||| ||||||||||||||||||    
T  9442360 aatattgttttaatttctataggtgtgcaaagttt 9442326  T

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