View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18341_low_14 (Length: 227)

Name: NF18341_low_14
Description: NF18341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18341_low_14
NF18341_low_14
[»] chr5 (14 HSPs)
chr5 (6-218)||(1586587-1586796)
chr5 (6-177)||(1580477-1580648)
chr5 (6-177)||(1604167-1604338)
chr5 (166-227)||(1586804-1586865)
chr5 (167-227)||(1586919-1586979)
chr5 (163-220)||(1591032-1591089)
chr5 (167-218)||(1586775-1586826)
chr5 (167-218)||(1586889-1586940)
chr5 (127-210)||(1591072-1591155)
chr5 (167-221)||(1587030-1587084)
chr5 (166-227)||(1586834-1586892)
chr5 (166-227)||(1586948-1587006)
chr5 (167-227)||(1586976-1587033)
chr5 (167-227)||(1587087-1587144)
[»] chr3 (1 HSPs)
chr3 (127-227)||(19270850-19270950)


Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 6 - 218
Target Start/End: Original strand, 1586587 - 1586796
Alignment:
Q  6 aagaagatcaatgcattgatgcaaaatatggaaacaatggaagaaaggaaattcaaccctttccctcactttactttgcataatctgttatcttattatt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1586587 aagaagatcaatgcattgatgcaaaatatggaaacaatggaagaaaggaaattcaaccctttccctcactttactttgcataatctgttatcttattatt 1586686  T
Q  106 cacctcagctttataccgaacaagagttagcacaaatacagaaaatcaatcaacatctttgccaagaaacaatggaaggagatcatgttcgccaagaaac 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||  |||||||||    
T  1586687 cacctcagctttataccgaacaagagttagcacaaatacagaaaatcaatcaacatctttgccaagaaacaatggaaggag---atgttgtccaagaaac 1586783  T
Q  206 aatggaaggagat 218  Q
    |||||||||||||    
T  1586784 aatggaaggagat 1586796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 6 - 177
Target Start/End: Original strand, 1580477 - 1580648
Alignment:
Q  6 aagaagatcaatgcattgatgcaaaatatggaaacaatggaagaaaggaaattcaaccctttccctcactttactttgcataatctgttatcttattatt 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  1580477 aagaagatcaatgcattgatgcaaaatatggaaacaatggaagaaaggaaattcaaccctttccctcactttactttgcataatctgttatcttattatg 1580576  T
Q  106 cacctcagctttataccgaacaagagttagcacaaatacagaaaatcaatcaacatctttgccaagaaacaa 177  Q
    |||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||| ||||||||||||    
T  1580577 cacctcagctttataccgaaaaagatttagcacaaatagagaaaatcaatcaacatcttcgccaagaaacaa 1580648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 6 - 177
Target Start/End: Complemental strand, 1604338 - 1604167
Alignment:
Q  6 aagaagatcaatgcattgatgcaaaatatggaaacaatggaagaaaggaaattcaaccctttccctcactttactttgcataatctgttatcttattatt 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  1604338 aagaagatcaatgcattgatgcaaaatatggaaacaatggaagaaaggaaattcaaccctttccctcactttactttgcataatctgttatcttattatg 1604239  T
Q  106 cacctcagctttataccgaacaagagttagcacaaatacagaaaatcaatcaacatctttgccaagaaacaa 177  Q
    |||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||| ||||||||||||    
T  1604238 cacctcagctttataccgaaaaagatttagcacaaatagagaaaatcaatcaacatcttcgccaagaaacaa 1604167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 1586804 - 1586865
Alignment:
Q  166 gccaagaaacaatggaaggagatcatgttcgccaagaaacaatggaaggagatgttatccaa 227  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1586804 gccaagaaacaacggaaggagatcatgttcgccaagaaacaatggaaggagatgttatccaa 1586865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 1586919 - 1586979
Alignment:
Q  167 ccaagaaacaatggaaggagatcatgttcgccaagaaacaatggaaggagatgttatccaa 227  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1586919 ccaagaaacaacggaaggagatcatgttcgccaagaaacaatggaaggagatgttatccaa 1586979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 1591089 - 1591032
Alignment:
Q  163 tttgccaagaaacaatggaaggagatcatgttcgccaagaaacaatggaaggagatgt 220  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  1591089 tttgccaagaaacaatggcacgagatcatgttcgccaagaaacaatggaaggagatgt 1591032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 167 - 218
Target Start/End: Original strand, 1586775 - 1586826
Alignment:
Q  167 ccaagaaacaatggaaggagatcatgttcgccaagaaacaatggaaggagat 218  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1586775 ccaagaaacaatggaaggagatcatgttcgccaagaaacaacggaaggagat 1586826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 167 - 218
Target Start/End: Original strand, 1586889 - 1586940
Alignment:
Q  167 ccaagaaacaatggaaggagatcatgttcgccaagaaacaatggaaggagat 218  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  1586889 ccaagaaacaatggaaggagatcatgttcaccaagaaacaacggaaggagat 1586940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 127 - 210
Target Start/End: Complemental strand, 1591155 - 1591072
Alignment:
Q  127 aagagttagcacaaatacagaaaatcaatcaacatctttgccaagaaacaatggaaggagatcatgttcgccaagaaacaatgg 210  Q
    ||||||||||| ||||| ||||| || |||||| | ||  |||||||||||||||| ||||||||||| |||||||||||||||    
T  1591155 aagagttagcagaaataaagaaactctatcaacgtgttctccaagaaacaatggaacgagatcatgtttgccaagaaacaatgg 1591072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 167 - 221
Target Start/End: Original strand, 1587030 - 1587084
Alignment:
Q  167 ccaagaaacaatggaaggagatcatgttcgccaagaaacaatggaaggagatgtt 221  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||    
T  1587030 ccaagaaacaatagaaggagatcatgttcgccaaaaaacaatggaaagagatgtt 1587084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 1586834 - 1586892
Alignment:
Q  166 gccaagaaacaatggaaggagatcatgttcgccaagaaacaatggaaggagatgttatccaa 227  Q
    |||||||||||||||||||||||   |||  ||||||||||||||||||||||||| |||||    
T  1586834 gccaagaaacaatggaaggagat---gttatccaagaaacaatggaaggagatgttttccaa 1586892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 1586948 - 1587006
Alignment:
Q  166 gccaagaaacaatggaaggagatcatgttcgccaagaaacaatggaaggagatgttatccaa 227  Q
    |||||||||||||||||||||   |||||  |||||| |||||||||||||||||| |||||    
T  1586948 gccaagaaacaatggaaggag---atgttatccaagacacaatggaaggagatgttgtccaa 1587006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 1586976 - 1587033
Alignment:
Q  167 ccaagaaacaatggaaggagatcatgttcgccaagaaacaatggaaggagatgttatccaa 227  Q
    |||||| |||||||||||||||  |||   ||||||||||||||||||||||||| |||||    
T  1586976 ccaagacacaatggaaggagatgttgt---ccaagaaacaatggaaggagatgttgtccaa 1587033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 1587087 - 1587144
Alignment:
Q  167 ccaagaaacaatggaaggagatcatgttcgccaagaaacaatggaaggagatgttatccaa 227  Q
    |||||||||||||||| |||||   |||| || |||||||||||||||||||||| |||||    
T  1587087 ccaagaaacaatggaaagagat---gttctcccagaaacaatggaaggagatgttgtccaa 1587144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 127 - 227
Target Start/End: Complemental strand, 19270950 - 19270850
Alignment:
Q  127 aagagttagcacaaatacagaaaatcaatcaacatctttgccaagaaacaatggaaggagatcatgttcgccaagaaacaatggaaggagatgttatcca 226  Q
    ||||||| ||||||||| ||||| || |||||| | ||  ||||||||||| |||| |||||||||||||||||||||||||||||  ||||||| ||||    
T  19270950 aagagttggcacaaataaagaaactctatcaacgtgttctccaagaaacaaaggaacgagatcatgttcgccaagaaacaatggaaaaagatgttgtcca 19270851  T
Q  227 a 227  Q
    |    
T  19270850 a 19270850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University