View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18341_low_15 (Length: 207)

Name: NF18341_low_15
Description: NF18341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18341_low_15
NF18341_low_15
[»] chr5 (18 HSPs)
chr5 (1-185)||(8548071-8548255)
chr5 (63-207)||(8644216-8644372)
chr5 (146-207)||(8636966-8637027)
chr5 (148-207)||(2904944-2905003)
chr5 (1-207)||(8528888-8529103)
chr5 (148-207)||(8535602-8535661)
chr5 (63-132)||(8677809-8677878)
chr5 (151-207)||(8641475-8641531)
chr5 (151-203)||(8677918-8677970)
chr5 (148-207)||(2856836-2856895)
chr5 (148-207)||(2874446-2874505)
chr5 (135-207)||(9074669-9074741)
chr5 (148-207)||(2845009-2845068)
chr5 (63-110)||(8636871-8636918)
chr5 (1-110)||(9074775-9074884)
chr5 (5-105)||(8535447-8535547)
chr5 (161-207)||(1600244-1600290)
chr5 (63-115)||(8641369-8641421)
[»] scaffold0627 (1 HSPs)
scaffold0627 (41-207)||(4641-4807)
[»] chr6 (1 HSPs)
chr6 (1-207)||(16716301-16716506)
[»] chr4 (1 HSPs)
chr4 (1-207)||(9443049-9443264)
[»] chr1 (2 HSPs)
chr1 (63-110)||(5130811-5130858)
chr1 (135-207)||(26324216-26324288)
[»] chr7 (3 HSPs)
chr7 (63-110)||(48361904-48361951)
chr7 (148-207)||(35779929-35779988)
chr7 (156-207)||(48361798-48361849)


Alignment Details
Target: chr5 (Bit Score: 177; Significance: 1e-95; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 8548255 - 8548071
Alignment:
Q  1 catgaattcgaaaatctttaactccatatttatcggggttatagtaagtaaaacaatccaatgaatgatataacaatacggcagcaccctcttcaaagtg 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8548255 catgaattcgaaaatctttgactccatatttatcggggttatagtaagtaaaacaatccaatgaatgatataacaatacggcagcaccctcttcaaagtg 8548156  T
Q  101 ttttaccggcaaacacaaagcatgacgccgcggagaaggattggtcaaagtatcaatgtggtaaaccttagtccatgactctcca 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  8548155 ttttaccggcaaacacaaagcatgacgccgcggagaaggattggtcaaagtatcaatgtggtaaatcttagtccatgactctcca 8548071  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 63 - 207
Target Start/End: Original strand, 8644216 - 8644372
Alignment:
Q  63 gaatgatataacaatacggcagcaccctcttcaaagtgttttaccggcaaacacaaagcatgacgccgcggag------------aaggattggtcaaag 150  Q
    |||||||||||||||| |||||| ||||||||||||| |||||||||| |||| ||| ||| |||| ||| |             ||||| || ||||||    
T  8644216 gaatgatataacaatatggcagccccctcttcaaagttttttaccggccaacataaaccataacgctgcgaatcaggtctgcccaaaggactgatcaaag 8644315  T
Q  151 tatcaatgtggtaaaccttagtccatgactctccaatgccatattcattcataaccc 207  Q
    ||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||    
T  8644316 tatcaatgttgtaaaccttagtccatgattctccaatgtcatattcattcataaccc 8644372  T

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Target: chr5; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 146 - 207
Target Start/End: Original strand, 8636966 - 8637027
Alignment:
Q  146 caaagtatcaatgtggtaaaccttagtccatgactctccaatgccatattcattcataaccc 207  Q
    ||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  8636966 caaagtatcgatgttgtaaaccttagtccatgattctccaatgccatattcattcataaccc 8637027  T

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Target: chr5; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 148 - 207
Target Start/End: Complemental strand, 2905003 - 2904944
Alignment:
Q  148 aagtatcaatgtggtaaaccttagtccatgactctccaatgccatattcattcataaccc 207  Q
    |||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||    
T  2905003 aagtatcaatgttgtaaatcttagtccatgattctccaatgccatattcattcataaccc 2904944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 8528888 - 8529103
Alignment:
Q  1 catgaattcgaaaatctttaactccatatttatcggggttatagtaagtaaaacaatccaatgaatgatataacaatacggcagcaccctcttcaaagtg 100  Q
    |||||||||||||| |||| |  |||||||| || || |  ||||| ||||||||||   | ||||||||| |||||| ||||||||| |||||||||||    
T  8528888 catgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcaccttcttcaaagtg 8528987  T
Q  101 ttttaccggcaaacacaaagcatgacgccgcggag---------aaggattggtcaaagtatcaatgtggtaaaccttagtccatgactctccaatgcca 191  Q
    ||||| |||| | |  ||| ||| || ||| |||          ||||||||  | ||||||| |||| ||||| |||||||||||| ||||||||||||    
T  8528988 ttttatcggccagcttaaaccataaccccgtggaacacgatccaaaggattgaacgaagtatcgatgttgtaaatcttagtccatgattctccaatgcca 8529087  T
Q  192 tattcattcataaccc 207  Q
    ||||||||||||||||    
T  8529088 tattcattcataaccc 8529103  T

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Target: chr5; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 148 - 207
Target Start/End: Original strand, 8535602 - 8535661
Alignment:
Q  148 aagtatcaatgtggtaaaccttagtccatgactctccaatgccatattcattcataaccc 207  Q
    |||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||    
T  8535602 aagtatcaatgttgtaaatcttagtccatgattctccaatgccatattcattcataaccc 8535661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 63 - 132
Target Start/End: Original strand, 8677809 - 8677878
Alignment:
Q  63 gaatgatataacaatacggcagcaccctcttcaaagtgttttaccggcaaacacaaagcatgacgccgcg 132  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||| ||| | ||||||    
T  8677809 gaatgatataacaatatggcagcaccctcttcaaagtgttttaccggccaacataaaccataatgccgcg 8677878  T

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Target: chr5; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 8641475 - 8641531
Alignment:
Q  151 tatcaatgtggtaaaccttagtccatgactctccaatgccatattcattcataaccc 207  Q
    ||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||    
T  8641475 tatcaatgttgtaagccttagtccatgattctccaatgccatattcattcataaccc 8641531  T

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Target: chr5; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 8677918 - 8677970
Alignment:
Q  151 tatcaatgtggtaaaccttagtccatgactctccaatgccatattcattcata 203  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  8677918 tatcaatgttgtaaaccttagtccatgattctccaatgccatattcattcata 8677970  T

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Target: chr5; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 148 - 207
Target Start/End: Complemental strand, 2856895 - 2856836
Alignment:
Q  148 aagtatcaatgtggtaaaccttagtccatgactctccaatgccatattcattcataaccc 207  Q
    |||||||||||| ||||||  |||||||||| ||||||||||||||||||||||||||||    
T  2856895 aagtatcaatgttgtaaacaatagtccatgattctccaatgccatattcattcataaccc 2856836  T

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Target: chr5; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 148 - 207
Target Start/End: Complemental strand, 2874505 - 2874446
Alignment:
Q  148 aagtatcaatgtggtaaaccttagtccatgactctccaatgccatattcattcataaccc 207  Q
    |||||||||||| ||||||  |||||||||| ||||||||||||||||||||||||||||    
T  2874505 aagtatcaatgttgtaaacaatagtccatgattctccaatgccatattcattcataaccc 2874446  T

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Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 9074741 - 9074669
Alignment:
Q  135 gaaggattggtcaaagtatcaatgtggtaaaccttagtccatgactctccaatgccatattcattcataaccc 207  Q
    |||||||||  | |||||||||||| |||||| ||||||||||| ||| |||| |||||||||||||||||||    
T  9074741 gaaggattgaacgaagtatcaatgttgtaaactttagtccatgattcttcaataccatattcattcataaccc 9074669  T

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Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 148 - 207
Target Start/End: Complemental strand, 2845068 - 2845009
Alignment:
Q  148 aagtatcaatgtggtaaaccttagtccatgactctccaatgccatattcattcataaccc 207  Q
    |||||||||||  ||||||  |||||||||| ||||||||||||||||||||||||||||    
T  2845068 aagtatcaatgctgtaaacaatagtccatgattctccaatgccatattcattcataaccc 2845009  T

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Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 63 - 110
Target Start/End: Original strand, 8636871 - 8636918
Alignment:
Q  63 gaatgatataacaatacggcagcaccctcttcaaagtgttttaccggc 110  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||    
T  8636871 gaatgatataacaatatggcagccccctcttcaaagtgttttaccggc 8636918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 9074884 - 9074775
Alignment:
Q  1 catgaattcgaaaatctttaactccatatttatcggggttatagtaagtaaaacaatccaatgaatgatataacaatacggcagcaccctcttcaaagtg 100  Q
    |||||||||||||| |||| | ||||||||| || || | |||| |  |||||||||   |  ||||||||||||||| ||||||||| |||||||||||    
T  9074884 catgaattcgaaaaactttgaatccatatttctcaggttcatagaagataaaacaattgtagcaatgatataacaatatggcagcaccttcttcaaagtg 9074785  T
Q  101 ttttaccggc 110  Q
    ||||| ||||    
T  9074784 ttttatcggc 9074775  T

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Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 105
Target Start/End: Original strand, 8535447 - 8535547
Alignment:
Q  5 aattcgaaaatctttaactccatatttatcggggttatagtaagtaaaacaatccaatgaatgatataacaatacggcagcaccctcttcaaagtgtttt 104  Q
    |||||||||| |||  | ||||||||| || || | ||||||  |||||||||   | |||||||||||||||| ||||||||| |||||||||||||||    
T  8535447 aattcgaaaaacttcgaatccatatttctcaggttcatagtagataaaacaattgcaggaatgatataacaatatggcagcaccttcttcaaagtgtttt 8535546  T
Q  105 a 105  Q
    |    
T  8535547 a 8535547  T

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Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 1600290 - 1600244
Alignment:
Q  161 gtaaaccttagtccatgactctccaatgccatattcattcataaccc 207  Q
    |||||||||||||||||| ||| ||||||||||||| ||||||||||    
T  1600290 gtaaaccttagtccatgattcttcaatgccatattccttcataaccc 1600244  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 8641369 - 8641421
Alignment:
Q  63 gaatgatataacaatacggcagcaccctcttcaaagtgttttaccggcaaaca 115  Q
    |||||||||||| |||  |||||||| |||||||||||| |||||||| ||||    
T  8641369 gaatgatataaccataacgcagcaccatcttcaaagtgtattaccggccaaca 8641421  T

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Target: scaffold0627 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 41 - 207
Target Start/End: Original strand, 4641 - 4807
Alignment:
Q  41 atagtaagtaaaacaatccaatgaatgatataacaatacggcagcaccctcttcaaagtgttttaccggcaaacacaaagcatgacgccgcggagaagga 140  Q
    |||||||||||||| |||  ||||||||| ||||||||| ||||||||||||||||||||||||||||| ||| |||||| |||||||| ||   |||||    
T  4641 atagtaagtaaaacgatcatatgaatgatgtaacaatacagcagcaccctcttcaaagtgttttaccggaaaatacaaaggatgacgccacgctaaagga 4740  T
Q  141 ttggtcaaagtatcaatgtggtaaaccttagtccatgactctccaatgccatattcattcataaccc 207  Q
    |||  |||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  4741 ttgtacaaagtattaatgtggtaaaccttagtccatgattcaccaatgccatattcattcataaccc 4807  T

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Target: chr6 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 16716301 - 16716506
Alignment:
Q  1 catgaattcgaaaatctttaactccatatttatcggggttatagtaagtaaaacaatccaatgaatgatataacaatacggcagcaccctcttcaaagtg 100  Q
    ||||||||||||||   || || ||||||||||  || | ||||||||||||||||||   ||||||||||||||||||| |||||||||||||||||||    
T  16716301 catgaattcgaaaacgcttgacaccatatttattaggctcatagtaagtaaaacaatcatttgaatgatataacaatacgccagcaccctcttcaaagtg 16716400  T
Q  101 ttttaccggcaaacacaaagcatgacgccgcggagaaggattggtcaaagtatcaatgtggtaaaccttagtccatgactctccaatgccatattcattc 200  Q
    ||||||||| ||||||||| ||| || || | || || | || ||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  16716401 ttttaccggaaaacacaaaacatcaccccac-gataaaggtttgtacaagtatcaatgtggtaaaccttagtccatgattctccaatgccatattcattc 16716499  T
Q  201 ataaccc 207  Q
    |||||||    
T  16716500 ataaccc 16716506  T

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Target: chr4 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 9443049 - 9443264
Alignment:
Q  1 catgaattcgaaaatctttaactccatatttatcggggttatagtaagtaaaacaatccaatgaatgatataacaatacggcagcaccctcttcaaagtg 100  Q
    |||||||||||||| |||| |  |||||||| || || |  ||||| ||||||||||  || ||||||||| |||||| ||||||||| |||||||||||    
T  9443049 catgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattgaaggaatgatatgacaatatggcagcaccttcttcaaagtg 9443148  T
Q  101 ttttaccggcaaacacaaagcatgacgccgcggag---------aaggattggtcaaagtatcaatgtggtaaaccttagtccatgactctccaatgcca 191  Q
    ||||| |||| | |  ||| ||| || ||| |||          ||||||||  | ||||||| |||| ||||| |||||||||||| ||||||||||||    
T  9443149 ttttatcggccagcttaaaccataaccccgtggaacacgatccaaaggattgaacgaagtatcgatgttgtaaatcttagtccatgattctccaatgcca 9443248  T
Q  192 tattcattcataaccc 207  Q
    ||||||||||||||||    
T  9443249 tattcattcataaccc 9443264  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 63 - 110
Target Start/End: Original strand, 5130811 - 5130858
Alignment:
Q  63 gaatgatataacaatacggcagcaccctcttcaaagtgttttaccggc 110  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||    
T  5130811 gaatgatatagcaatatggcagcaccctcttcaaagtgttttaccggc 5130858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 26324288 - 26324216
Alignment:
Q  135 gaaggattggtcaaagtatcaatgtggtaaaccttagtccatgactctccaatgccatattcattcataaccc 207  Q
    |||||||||  | ||| ||| |||| ||||| |||||||||||| |||||| |||||||||||||||||||||    
T  26324288 gaaggattgaacgaagcatcgatgttgtaaatcttagtccatgattctccagtgccatattcattcataaccc 26324216  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 110
Target Start/End: Complemental strand, 48361951 - 48361904
Alignment:
Q  63 gaatgatataacaatacggcagcaccctcttcaaagtgttttaccggc 110  Q
    |||||||||||||||| ||||||||| |||||||||||||||| ||||    
T  48361951 gaatgatataacaatatggcagcaccttcttcaaagtgttttatcggc 48361904  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 148 - 207
Target Start/End: Original strand, 35779929 - 35779988
Alignment:
Q  148 aagtatcaatgtggtaaaccttagtccatgactctccaatgccatattcattcataaccc 207  Q
    |||| ||||||| ||||||||||||||| || ||| |||||||||  |||||||||||||    
T  35779929 aagtctcaatgttgtaaaccttagtccacgattcttcaatgccatgctcattcataaccc 35779988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 48361849 - 48361798
Alignment:
Q  156 atgtggtaaaccttagtccatgactctccaatgccatattcattcataaccc 207  Q
    |||| ||||||||||||| |||| ||| |||| |||||||||||||||||||    
T  48361849 atgttgtaaaccttagtctatgattcttcaataccatattcattcataaccc 48361798  T

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