View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18341_low_2 (Length: 536)
Name: NF18341_low_2
Description: NF18341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18341_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 20 - 349
Target Start/End: Complemental strand, 14310868 - 14310539
Alignment:
| Q |
20 |
ccataccttgttactagtagattgagattcagcttccagcttgcatttggaaacttcgtagtcaatttcttccaagagatcctctgcatctaacacagca |
119 |
Q |
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| T |
14310868 |
ccataccttgttagtagtagattgagattcagcttccagcttagatttggaaacctcaaagtcaatttcttccaagagatcctctgcatctaacacagca |
14310769 |
T |
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| Q |
120 |
tctttgacagcatcaagccatgctctcacgtttggatttctgatctgcttcagttctgcatcatcgaccacagcattgatggagagaagtgtgatgttga |
219 |
Q |
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| T |
14310768 |
tctttgacagcatcaagccatgctctcacgtttggatttctgatctgcttcagttctgcatcatcgaccacagcatcgatggagagaagtgtgatgttga |
14310669 |
T |
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| Q |
220 |
gtttcttcagaagcttgtcattgagttttctttctcaaaagtagtcttcgattccagcagaagcaagcttttcgaatgtaacttgaaggaaagcagaaag |
319 |
Q |
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| T |
14310668 |
gtttctttagaagattgtgattgagttttgttcttcgaaagtagtctccgatttcagcagaagcaagcttttcgaatgtgacttgaaggaaagcggaaag |
14310569 |
T |
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| Q |
320 |
aagagcaccgccaaccaattcgactgccat |
349 |
Q |
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| T |
14310568 |
aagagcaccaccaacaaattcaactgccat |
14310539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 80 - 354
Target Start/End: Complemental strand, 14295709 - 14295435
Alignment:
| Q |
80 |
gtcaatttcttccaagagatcctctgcatctaacacagcatctttgacagcatcaagccatgctctcacgtttggatttctgatctgcttcagttctgca |
179 |
Q |
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| T |
14295709 |
gtcaatttcatctaataaatcttctgcttcaaacacaacatctttgacagcatcgagccatgctttcacttgttgatttctgatctgcttttgttccgca |
14295610 |
T |
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| Q |
180 |
tcatcgaccacagcattgatggagagaagtgtgatgttgagtttcttcagaagcttgtcattgagttttctttctcaaaagtagtcttcgattccagcag |
279 |
Q |
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||||||| ||| |||||||||| |||| |||||||||||||||| |||||||| ||||||| ||||||| || ||||||||| | | | ||| || |
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| T |
14295609 |
tcatcgataacaacattgatggatagaaacatgatgttgagtttcttaagaagcttctcattgaattttcttccttgaaagtagtccacaacttcaggag |
14295510 |
T |
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| Q |
280 |
aagcaagcttttcgaatgtaacttgaaggaaagcagaaagaagagcaccgccaaccaattcgactgccatggcac |
354 |
Q |
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|||| | | | || |||| ||| |||||| |||| ||||||||||||| ||||| ||||| || ||||| |||| |
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| T |
14295509 |
aagccaacctgtcaaatgcaacctgaagggaagctgaaagaagagcactgccaataaattcaacagccatagcac |
14295435 |
T |
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