View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18341_low_4 (Length: 495)

Name: NF18341_low_4
Description: NF18341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18341_low_4
NF18341_low_4
[»] chr1 (18 HSPs)
chr1 (191-476)||(50916020-50916304)
chr1 (1-139)||(50915834-50915969)
chr1 (18-94)||(33579355-33579428)
chr1 (18-94)||(43530204-43530277)
chr1 (18-94)||(50097716-50097789)
chr1 (18-94)||(51303081-51303154)
chr1 (18-94)||(52073364-52073437)
chr1 (18-91)||(17556896-17556967)
chr1 (34-93)||(30543285-30543341)
chr1 (34-92)||(1278573-1278628)
chr1 (18-92)||(25561224-25561295)
chr1 (3-69)||(718464-718531)
chr1 (2-94)||(28848688-28848778)
chr1 (18-94)||(9314961-9315034)
chr1 (34-94)||(41432684-41432741)
chr1 (19-94)||(7915615-7915689)
chr1 (5-94)||(10618925-10619012)
chr1 (34-92)||(50226134-50226189)
[»] chr3 (15 HSPs)
chr3 (18-94)||(50201667-50201743)
chr3 (34-94)||(4247219-4247276)
chr3 (34-94)||(13638528-13638585)
chr3 (18-93)||(31651351-31651423)
chr3 (34-94)||(27681905-27681962)
chr3 (18-94)||(46891488-46891561)
chr3 (18-94)||(3333967-3334039)
chr3 (2-94)||(32858932-32859021)
chr3 (18-94)||(1132841-1132914)
chr3 (34-94)||(3537308-3537365)
chr3 (18-94)||(11500203-11500278)
chr3 (20-87)||(32720990-32721054)
chr3 (19-94)||(54126362-54126434)
chr3 (18-69)||(9768301-9768350)
chr3 (44-94)||(19148269-19148316)
[»] chr2 (15 HSPs)
chr2 (5-94)||(36030895-36030982)
chr2 (18-94)||(33206888-33206962)
chr2 (34-94)||(3022797-3022854)
chr2 (18-94)||(4666237-4666310)
chr2 (31-94)||(26427634-26427694)
chr2 (2-94)||(30523379-30523469)
chr2 (18-94)||(41503256-41503330)
chr2 (34-94)||(8410852-8410909)
chr2 (34-94)||(10165515-10165572)
chr2 (18-68)||(15803297-15803347)
chr2 (18-94)||(30265265-30265338)
chr2 (18-92)||(1270608-1270680)
chr2 (18-51)||(21835049-21835082)
chr2 (35-94)||(39670102-39670158)
chr2 (31-93)||(22101701-22101760)
[»] chr7 (15 HSPs)
chr7 (18-94)||(24923300-24923373)
chr7 (34-94)||(48935072-48935131)
chr7 (19-94)||(42112866-42112938)
chr7 (17-94)||(33187752-33187826)
chr7 (18-94)||(22556610-22556683)
chr7 (18-94)||(4787908-4787982)
chr7 (18-69)||(38138055-38138106)
chr7 (18-94)||(14676332-14676405)
chr7 (34-94)||(23465922-23465979)
chr7 (23-69)||(31055476-31055522)
chr7 (18-94)||(32650297-32650370)
chr7 (34-94)||(42266929-42266986)
chr7 (34-94)||(19644394-19644452)
chr7 (34-92)||(13044251-13044306)
chr7 (34-94)||(46509366-46509424)
[»] chr4 (18 HSPs)
chr4 (34-94)||(46669867-46669924)
chr4 (18-94)||(28880093-28880166)
chr4 (34-94)||(49936604-49936661)
chr4 (5-93)||(47063785-47063871)
chr4 (18-93)||(4441928-4442001)
chr4 (18-94)||(368159-368233)
chr4 (18-91)||(6836505-6836574)
chr4 (2-94)||(24662636-24662726)
chr4 (18-94)||(7182097-7182170)
chr4 (38-94)||(27143280-27143333)
chr4 (34-94)||(31530121-31530178)
chr4 (34-94)||(32060748-32060805)
chr4 (34-94)||(32648926-32648983)
chr4 (34-94)||(41844537-41844594)
chr4 (34-94)||(53013689-53013746)
chr4 (31-94)||(27485182-27485242)
chr4 (18-79)||(31418862-31418922)
chr4 (44-94)||(48620391-48620438)
[»] chr8 (10 HSPs)
chr8 (18-94)||(13258588-13258661)
chr8 (18-94)||(13537444-13537517)
chr8 (18-94)||(13626992-13627065)
chr8 (18-94)||(39194033-39194106)
chr8 (34-94)||(6839720-6839780)
chr8 (18-94)||(10878691-10878761)
chr8 (22-86)||(23963085-23963148)
chr8 (34-92)||(29584278-29584333)
chr8 (68-96)||(35616660-35616688)
chr8 (34-92)||(40984996-40985051)
[»] chr5 (14 HSPs)
chr5 (18-94)||(9684697-9684770)
chr5 (36-94)||(6491286-6491341)
chr5 (2-94)||(19389717-19389807)
chr5 (18-94)||(3081238-3081311)
chr5 (18-94)||(4841615-4841688)
chr5 (18-94)||(35704952-35705025)
chr5 (37-94)||(26018843-26018897)
chr5 (34-94)||(9096413-9096470)
chr5 (34-94)||(17092999-17093056)
chr5 (18-94)||(17668040-17668113)
chr5 (34-94)||(28154792-28154849)
chr5 (34-94)||(32824750-32824807)
chr5 (34-94)||(33718283-33718340)
chr5 (44-94)||(1935039-1935086)
[»] chr6 (9 HSPs)
chr6 (32-94)||(33677125-33677184)
chr6 (18-93)||(6695398-6695471)
chr6 (18-94)||(13120328-13120401)
chr6 (38-94)||(2502292-2502345)
chr6 (34-94)||(8439317-8439374)
chr6 (18-94)||(22817247-22817320)
chr6 (34-94)||(33590251-33590308)
chr6 (38-94)||(33939049-33939102)
chr6 (34-92)||(6687870-6687925)
[»] scaffold0927 (1 HSPs)
scaffold0927 (18-96)||(2816-2891)
[»] scaffold0245 (1 HSPs)
scaffold0245 (34-92)||(4250-4305)
[»] scaffold0229 (1 HSPs)
scaffold0229 (34-92)||(4581-4636)
[»] scaffold1763 (1 HSPs)
scaffold1763 (34-94)||(526-583)
[»] scaffold0717 (1 HSPs)
scaffold0717 (34-94)||(1680-1737)
[»] scaffold0119 (2 HSPs)
scaffold0119 (18-92)||(30557-30629)
scaffold0119 (18-92)||(37225-37297)


Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 191 - 476
Target Start/End: Original strand, 50916020 - 50916304
Alignment:
Q  191 tactaaattgacaccgtagtagcaggcaacattggattaacctttaaacctcat---tcaaccgccagattgaatagttcgataaactaggtacaagttc 287  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||    
T  50916020 tactaaatcgacaccgtagtagcaggcaacattggactaacctttaaacctcatcattcaaccgccagattgaatagttcgataaactaggtacaagttc 50916119  T
Q  288 taaaatcagatccagatcctataaccaagtgttatatatattttcaactactattgtgactaatgaaagc-aaatatgtggattcatgaacgcaatcagt 386  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||       
T  50916120 taaaatcagatccagatcctataaccaagtattatatatattttcaactactattgtgactaatggaagcaaaatatgtggattcatgaacgcaatc--- 50916216  T
Q  387 tagtgattccctttatgagattttatttcttcaagtacaaacatggtttaccacagggaaaatagcaagaaaatcagtctgtataagtct 476  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50916217 --gtgattccctttatgagattttatttcttcaagtacaaacatggtttaccacagggaaaatagcaagaaaatcagtctgtataagtct 50916304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 50915834 - 50915969
Alignment:
Q  1 agtaaaatcattcacacttttgaaagagtgttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatattgtgaac 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| |   ||||||||||||||||||||||||||||    
T  50915834 agtaaaatcattcacacttttgaaagagtgttattgtagagaatgataaattcatgtgtatgattaaaa---tatttttaattttaagaatattgtgaac 50915930  T
Q  101 caacctcttcaaactactactattactccttccagttgc 139  Q
    |||||||||||||||| ||| ||||||||||| ||||||    
T  50915931 caacctcttcaaactattacgattactccttcgagttgc 50915969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 33579428 - 33579355
Alignment:
Q  18 ttttgaaagagtgttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||||||||||  | ||||||||||||||||||| |||| ||||   | |||||||||||||||||||||||||||    
T  33579428 ttttgaaagagtaattttttagagaatgataaattaatgcttatg---actaatatatttttaattttaagaatatt 33579355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 43530204 - 43530277
Alignment:
Q  18 ttttgaaagagtgttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    |||| |||||||||| ||||||||| ||||||||| |||| ||||||   |||||||||||||||||||||| ||||    
T  43530204 ttttaaaagagtgtttttttagagagtgataaattaatgcttatgat---taatatatttttaattttaagagtatt 43530277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 50097789 - 50097716
Alignment:
Q  18 ttttgaaagagtgttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    |||||||||||| || ||||||||| |||||||||  ||  |||||||||||   ||||||||||||||||||||||    
T  50097789 ttttgaaagagtatttttttagagagtgataaattattgtttatgattaata---tatttttaattttaagaatatt 50097716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 51303081 - 51303154
Alignment:
Q  18 ttttgaaagagtgttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    |||| |||||||||  ||||||||||||||||||| |||| ||||||   |||||||||||| || |||||||||||    
T  51303081 ttttcaaagagtgtatttttagagaatgataaattaatgcttatgat---taatatattttttatgttaagaatatt 51303154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 52073364 - 52073437
Alignment:
Q  18 ttttgaaagagtgttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||||||||||  | ||||||||||||||||||| | |  ||||||||||   |||||||||||||||||||||||    
T  52073364 ttttgaaagagtaattttttagagaatgataaattaacgtttatgattaat---atatttttaattttaagaatatt 52073437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 17556967 - 17556896
Alignment:
Q  18 ttttgaaagagtgttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaat 91  Q
    |||| |||||||||| | ||||||| ||||||||| ||||| |||||||||| ||| |||||||||||||||||    
T  17556967 tttttaaagagtgttttcttagagagtgataaattaatgcggatgattaata-tat-tttttaattttaagaat 17556896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 34 - 93
Target Start/End: Original strand, 30543285 - 30543341
Alignment:
Q  34 ttttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatat 93  Q
    ||||||||||||||||||| || | ||||||||||   ||||||||||||||||||||||    
T  30543285 ttttagagaatgataaattaatacttatgattaat---atatttttaattttaagaatat 30543341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 92
Target Start/End: Complemental strand, 1278628 - 1278573
Alignment:
Q  34 ttttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaata 92  Q
    |||| |||||||||||||| |||| |||||||||||   ||||||||||||||||||||    
T  1278628 ttttggagaatgataaattaatgcttatgattaata---tatttttaattttaagaata 1278573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 25561224 - 25561295
Alignment:
Q  18 ttttgaaagagtgttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaata 92  Q
    |||||||||||| || |||||| || |||||| || |||| ||||||||||   |||||||||||||||||||||    
T  25561224 ttttgaaagagtatttttttagcgagtgataagttaatgcttatgattaat---atatttttaattttaagaata 25561295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 718464 - 718531
Alignment:
Q  3 taaaatcattcacactttt-gaaagagtgttattttagagaatgataaatttatgcgtatgattaata 69  Q
    ||||||| |||||| |||| ||||||||| | ||||| ||||||||||||| |||| |||||||||||    
T  718464 taaaatctttcacatttttcgaaagagtgattttttaaagaatgataaattaatgcttatgattaata 718531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 94
Target Start/End: Original strand, 28848688 - 28848778
Alignment:
Q  2 gtaaaatcattcacacttttg-aaagagtgttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    |||||||| |||||| ||||  |||||||  | ||||||||||||||||||| |||| ||||||   || ||||||||||||||||| ||||||    
T  28848688 gtaaaatctttcacaattttttaaagagtcattttttagagaatgataaattaatgcctatgat---tactatatttttaattttaaaaatatt 28848778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 9314961 - 9315034
Alignment:
Q  18 ttttgaaagagtgttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||||||||||| | |||||| |||||||||||| |  | ||||||   ||||||||||| |||||||||||||||    
T  9314961 ttttgaaagagtgattttttagggaatgataaattcacacttatgat---taatatattttaaattttaagaatatt 9315034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 41432684 - 41432741
Alignment:
Q  34 ttttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||||||||| ||||||| || | ||||||||||   |||||||||||||||||||||||    
T  41432684 ttttagagaataataaattaatacttatgattaat---atatttttaattttaagaatatt 41432741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 7915689 - 7915615
Alignment:
Q  19 tttgaaagagtgttattttagagaatgataaatttatgcgtatgattaata-atatatttttaattttaagaatatt 94  Q
    ||||||||||| || ||||  ||| ||||||||| |||| ||||||||||| |||||||||||| ||||||||||||    
T  7915689 tttgaaagagtatttttttt-agagtgataaattaatgcttatgattaatatatatatttttaa-tttaagaatatt 7915615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 10619012 - 10618925
Alignment:
Q  5 aaatcattcacacttt-tgaaagagtgttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||| |||||| ||| |||||| || || ||||||||| ||||||||  |||| |||||||||||   |||||||||||||| |||||||    
T  10619012 aaatctttcacattttctgaaagggtctttttttagagagtgataaatgaatgcttatgattaata---tatttttaattttaggaatatt 10618925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 92
Target Start/End: Complemental strand, 50226189 - 50226134
Alignment:
Q  34 ttttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaata 92  Q
    |||||||||||||||||||||| | ||||||   || ||||||||||||||||| ||||    
T  50226189 ttttagagaatgataaatttattcatatgat---tactatatttttaattttaaaaata 50226134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 50201743 - 50201667
Alignment:
Q  18 ttttgaaagagtgttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    |||||||||||| || |||||||||||| |||||| |||| |||||||||||||||||||||| |||||||||||||    
T  50201743 ttttgaaagagtatttttttagagaatggtaaattaatgcttatgattaataatatatttttagttttaagaatatt 50201667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 34 - 94
Target Start/End: Complemental strand, 4247276 - 4247219
Alignment:
Q  34 ttttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||||||||||||||||| |||| |||||||   ||||||||||||||||||||||||||    
T  4247276 ttttagagaatgataaattaatgcttatgatt---aatatatttttaattttaagaatatt 4247219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 34 - 94
Target Start/End: Complemental strand, 13638585 - 13638528
Alignment:
Q  34 ttttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||||||||||||||||| |||| |||||||   ||||||||||||||||||||||||||    
T  13638585 ttttagagaatgataaattaatgcttatgatt---aatatatttttaattttaagaatatt 13638528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 31651351 - 31651423
Alignment:
Q  18 ttttgaaagagtgttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatat 93  Q
    ||||||||||||  | |||||||||||| |||||| |||| ||||||   ||||||||||||||||||||||||||    
T  31651351 ttttgaaagagtaattttttagagaatgttaaattaatgcttatgat---taatatatttttaattttaagaatat 31651423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 94
Target Start/End: Complemental strand, 27681962 - 27681905
Alignment:
Q  34 ttttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||||||| ||||||||| |||| |||||||||||   ||||||||||||||||||||||    
T  27681962 ttttagagagtgataaattaatgcttatgattaata---tatttttaattttaagaatatt 27681905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 46891561 - 46891488
Alignment:
Q  18 ttttgaaagagtgttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    |||||||||| | || ||||||||| ||||||||| || | |||||||||||   ||||||||||||||||||||||    
T  46891561 ttttgaaagattatttttttagagactgataaattaatacttatgattaata---tatttttaattttaagaatatt 46891488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 3334039 - 3333967
Alignment:
Q  18 ttttgaaagagtgttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||| |||||| || ||||||||||||||||||| |||  |||||||||||    ||||| |||||||||||||||    
T  3334039 ttttggaagagtatttttttagagaatgataaattaatgtttatgattaata----attttcaattttaagaatatt 3333967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 94
Target Start/End: Complemental strand, 32859021 - 32858932
Alignment:
Q  2 gtaaaatcattcacactttt-gaaagagtgttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    |||||||| |||||| |||| ||||||||  | ||||||||||||||||||| || | || ||||||||   ||||||||||||||||||||||    
T  32859021 gtaaaatctttcacattttttgaaagagtaat-ttttagagaatgataaattaatacttacgattaata---tatttttaattttaagaatatt 32858932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 1132841 - 1132914
Alignment:
Q  18 ttttgaaagagtgttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||||||||||  | ||||||||||||||||||| |||   ||| |   |||||||||||||||||||||||||||    
T  1132841 ttttgaaagagtaattttttagagaatgataaattaatgttcatggt---taatatatttttaattttaagaatatt 1132914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 94
Target Start/End: Complemental strand, 3537365 - 3537308
Alignment:
Q  34 ttttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||||||||||||||||| |||| ||||||   || ||||||||||||||||| ||||||    
T  3537365 ttttagagaatgataaattaatgcatatgat---tactatatttttaattttaaaaatatt 3537308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 11500278 - 11500203
Alignment:
Q  18 ttttgaaagagtg-ttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    |||||||||| || || ||||||||||||||||||| |||  ||| ||||||| ||| ||||||||||||||||||||    
T  11500278 ttttgaaagaatgatttttttagagaatgataaattaatgtttataattaata-tat-tttttaattttaagaatatt 11500203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 32720990 - 32721054
Alignment:
Q  20 ttgaaagagtgttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaa 87  Q
    |||||||||| || || |||||| ||||||||| |||| ||||||   ||||||||||||||||||||    
T  32720990 ttgaaagagtatttttgtagagagtgataaattaatgcttatgat---taatatatttttaattttaa 32721054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 54126434 - 54126362
Alignment:
Q  19 tttgaaagagtgttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||||||| |||| ||||| ||||||||||||| |||   || || |||||||||||||| ||||||| ||||||    
T  54126434 tttgaaagaatgtttttttaaagaatgataaattaatg---attatgaataatatattttttattttaacaatatt 54126362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 9768350 - 9768301
Alignment:
Q  18 ttttgaaagagtgttattttagagaatgataaatttatgcgtatgattaata 69  Q
    ||||||||||||||| ||||||||  ||||||||| |||| |||||||||||    
T  9768350 ttttgaaagagtgtttttttagag--tgataaattaatgcttatgattaata 9768301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 44 - 94
Target Start/End: Complemental strand, 19148316 - 19148269
Alignment:
Q  44 tgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||||||| |||| |||||||||||   ||||||||||||||||||||||    
T  19148316 tgataaattaatgcttatgattaata---tatttttaattttaagaatatt 19148269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 36030982 - 36030895
Alignment:
Q  5 aaatcattcacacttttg-aaagagtgttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||| |||||| ||||| ||||||| || ||||||||||||||||||| |||| |||||||   ||||||||||||||||||||||||||    
T  36030982 aaatctttcacatttttggaaagagtatttttttagagaatgataaattaatgcttatgatt---aatatatttttaattttaagaatatt 36030895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 33206962 - 33206888
Alignment:
Q  18 ttttgaaagagtgttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||||||||||||| |||||||||||| |||||| |||| ||||||||  ||||||||||||| || || ||||||    
T  33206962 ttttgaaagagtgtttttttagagaatgttaaattaatgcttatgatta--aatatatttttaaattaaaaaatatt 33206888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 94
Target Start/End: Complemental strand, 3022854 - 3022797
Alignment:
Q  34 ttttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||||||||||||||||| |||  |||||||||||   ||||||||||||||||||||||    
T  3022854 ttttagagaatgataaattaatgtttatgattaata---tatttttaattttaagaatatt 3022797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 4666310 - 4666237
Alignment:
Q  18 ttttgaaagagtgttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    |||||||||||| || | ||||||| ||||||||| |||| |||||||   |||||||||| |||||||||||||||    
T  4666310 ttttgaaagagtattttattagagagtgataaattaatgcttatgatt---aatatattttaaattttaagaatatt 4666237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 26427694 - 26427634
Alignment:
Q  31 ttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    |||||||||||||||||| ||| |||| |||||||   ||||||||||||||||||| ||||||    
T  26427694 ttattttagagaatgatatattaatgcttatgatt---aatatatttttaattttaaaaatatt 26427634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 94
Target Start/End: Complemental strand, 30523469 - 30523379
Alignment:
Q  2 gtaaaatcattcacactttt-gaaagagtgttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    |||||||| |||||| |||| ||||||||  | ||||| ||||||||||||| || | |||||||   |||||||||||||||| |||||||||    
T  30523469 gtaaaatctttcacattttttgaaagagtagttttttaaagaatgataaattaatacttatgatt---aatatatttttaatttcaagaatatt 30523379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 41503330 - 41503256
Alignment:
Q  18 ttttgaaagagt-gttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    |||||||||||| |||  |||||||||||||||||| |||  |||||||||||   ||||||||| ||||||||||||    
T  41503330 ttttgaaagagtagtttgtttagagaatgataaattaatgattatgattaata---tatttttaagtttaagaatatt 41503256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 8410852 - 8410909
Alignment:
Q  34 ttttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||||||||||||||||| || | ||||||   ||||||| |||||||||||||||||||    
T  8410852 ttttagagaatgataaattaatacttatgat---taatatacttttaattttaagaatatt 8410909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 94
Target Start/End: Complemental strand, 10165572 - 10165515
Alignment:
Q  34 ttttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||||||||||||||| | || |||||||||   |||||| |||||||||||||||||||    
T  10165572 ttttagagaatgataaactaatacgtatgatt---aatatacttttaattttaagaatatt 10165515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 15803347 - 15803297
Alignment:
Q  18 ttttgaaagagtgttattttagagaatgataaatttatgcgtatgattaat 68  Q
    |||||||||||| || ||||||||| ||||||||| |||| ||||||||||    
T  15803347 ttttgaaagagtatttttttagagagtgataaattaatgcttatgattaat 15803297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 30265265 - 30265338
Alignment:
Q  18 ttttgaaagagtgttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||||||||||  | ||||||||||| ||||||| |||| ||||||   |||||||||||||| || |||||||||    
T  30265265 ttttgaaagagtaattttttagagaataataaattaatgcttatgat---taatatatttttaacttcaagaatatt 30265338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 1270608 - 1270680
Alignment:
Q  18 ttttgaaagagt-gttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaata 92  Q
    |||| ||||||| ||| ||||||||||||||||||| |||| ||||||   || ||||||||||||||||| ||||    
T  1270608 ttttaaaagagtagtttttttagagaatgataaattaatgcatatgat---tactatatttttaattttaaaaata 1270680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 21835082 - 21835049
Alignment:
Q  18 ttttgaaagagtgttattttagagaatgataaat 51  Q
    ||||||||||||||| ||||||||||||||||||    
T  21835082 ttttgaaagagtgtttttttagagaatgataaat 21835049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 94
Target Start/End: Original strand, 39670102 - 39670158
Alignment:
Q  35 tttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    |||||||||||||||||| |||  |||||| ||||   ||||||||||||||||||||||    
T  39670102 tttagagaatgataaattaatgtttatgatcaata---tatttttaattttaagaatatt 39670158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 22101760 - 22101701
Alignment:
Q  31 ttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatat 93  Q
    |||||||||||| | ||||||| |||| |||||||| ||   |||||||||||||||||||||    
T  22101760 ttattttagagagtcataaattaatgcttatgattatta---tatttttaattttaagaatat 22101701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 24923300 - 24923373
Alignment:
Q  18 ttttgaaagagtgttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||||||||||| | ||||||||||||||||||| |||  ||||||   |||||||||||||||||||||||||||    
T  24923300 ttttgaaagagtggttttttagagaatgataaattaatgattatgat---taatatatttttaattttaagaatatt 24923373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 34 - 94
Target Start/End: Complemental strand, 48935131 - 48935072
Alignment:
Q  34 ttttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||||||||||||||||| |||| |||||||||| |||||||||||||||||| ||||||    
T  48935131 ttttagagaatgataaattaatgcttatgattaat-atatatttttaattttaaaaatatt 48935072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 42112866 - 42112938
Alignment:
Q  19 tttgaaagagtgttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    |||||||||||||| ||||||||||||||||| | |||| ||||||   | ||||||||||||| |||||||||||    
T  42112866 tttgaaagagtgtttttttagagaatgataaactaatgcttatgat---tcatatatttttaatattaagaatatt 42112938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 33187752 - 33187826
Alignment:
Q  17 cttttgaaagagtgttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||||||||||| || | ||||||  ||||||||| |||| ||||||||||   |||||||||||||||||||||||    
T  33187752 cttttgaaagagtattttcttagagggtgataaattaatgcttatgattaat---atatttttaattttaagaatatt 33187826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 22556610 - 22556683
Alignment:
Q  18 ttttgaaagagtgttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    |||| ||||||| || ||||||||| ||||||| | |||| ||||||||||   |||||||||||||||||||||||    
T  22556610 ttttaaaagagtatttttttagagagtgataaactaatgcttatgattaat---atatttttaattttaagaatatt 22556683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 4787908 - 4787982
Alignment:
Q  18 ttttgaaagagtg-ttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||||||||||  || ||||||||| ||||||||| |||| ||||||   |||||||||||||||||||| ||||||    
T  4787908 ttttgaaagagtaatttttttagagagtgataaattaatgcttatgat---taatatatttttaattttaaaaatatt 4787982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 38138106 - 38138055
Alignment:
Q  18 ttttgaaagagtgttattttagagaatgataaatttatgcgtatgattaata 69  Q
    |||||| ||||| || ||||||||||||||||||| |||| |||||||||||    
T  38138106 ttttgatagagtatttttttagagaatgataaattaatgcttatgattaata 38138055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 14676405 - 14676332
Alignment:
Q  18 ttttgaaagagtgttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||||||||||  | |||||| |||||||||||| |||| |||| |   ||||||||||| |||||||||||||||    
T  14676405 ttttgaaagagtaattttttagggaatgataaattaatgcttatggt---taatatattttcaattttaagaatatt 14676332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 23465922 - 23465979
Alignment:
Q  34 ttttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||||||||||||||||| || | ||||||   |||||||| ||||||||||||||||||    
T  23465922 ttttagagaatgataaattaattcttatgat---taatatatatttaattttaagaatatt 23465979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 31055522 - 31055476
Alignment:
Q  23 aaagagtgttattttagagaatgataaatttatgcgtatgattaata 69  Q
    |||||||||| ||||||||| ||||||||| |||| |||||||||||    
T  31055522 aaagagtgtttttttagagagtgataaattaatgcttatgattaata 31055476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 32650297 - 32650370
Alignment:
Q  18 ttttgaaagagtgttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||||||||||  | ||||||||||||||||||| |||| |||||||| |    ||||||||||||||| ||||||    
T  32650297 ttttgaaagagtagttttttagagaatgataaattaatgcatatgattattt---tatttttaattttaaaaatatt 32650370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 42266929 - 42266986
Alignment:
Q  34 ttttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||||||||||||||||| |||| |||| ||| ||   ||||||||||||||||||||||    
T  42266929 ttttagagaatgataaattaatgcttatgtttacta---tatttttaattttaagaatatt 42266986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 94
Target Start/End: Complemental strand, 19644452 - 19644394
Alignment:
Q  34 ttttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||||||||| ||||||| || | |||||||||||  ||| |||||||||||||||||||    
T  19644452 ttttagagaattataaattaatacttatgattaata--atacttttaattttaagaatatt 19644394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 92
Target Start/End: Complemental strand, 13044306 - 13044251
Alignment:
Q  34 ttttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaata 92  Q
    ||||||||||||||||||| |||| ||||||   || ||||||||||||||||| ||||    
T  13044306 ttttagagaatgataaattaatgcatatgat---tactatatttttaattttaaaaata 13044251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 94
Target Start/End: Complemental strand, 46509424 - 46509366
Alignment:
Q  34 ttttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||||||||||||||||| |||  |||| |||||| ||| ||||||||||||||||||||    
T  46509424 ttttagagaatgataaattaatgtttatggttaata-tat-tttttaattttaagaatatt 46509366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 46669867 - 46669924
Alignment:
Q  34 ttttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    |||||||||||||||||||||||| ||||||   |||||||||||||||||||||||||||    
T  46669867 ttttagagaatgataaatttatgcttatgat---taatatatttttaattttaagaatatt 46669924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 28880166 - 28880093
Alignment:
Q  18 ttttgaaagagtgttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    |||||||||||| || ||||||||| ||||||||| |||  |||||||   ||||||||||||||||||||||||||    
T  28880166 ttttgaaagagtatttttttagagagtgataaattaatgtttatgatt---aatatatttttaattttaagaatatt 28880093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 34 - 94
Target Start/End: Complemental strand, 49936661 - 49936604
Alignment:
Q  34 ttttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||||||||||||||||| |||| |||||||   ||||||||||||||||||||||||||    
T  49936661 ttttagagaatgataaattaatgcttatgatt---aatatatttttaattttaagaatatt 49936604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 47063871 - 47063785
Alignment:
Q  5 aaatcattcacactttt-gaaagagtgttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatat 93  Q
    ||||||||| || |||| |||||| |||  ||||||||| ||||||||| |||| |||||||||||   |||||||||||||||||||||    
T  47063871 aaatcattcgcatttttcgaaagattgtgtttttagagagtgataaattgatgcttatgattaata---tatttttaattttaagaatat 47063785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 4441928 - 4442001
Alignment:
Q  18 ttttgaaagagtgttatttt-agagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatat 93  Q
    |||| ||||||| ||||||| ||||| ||||||||| |||| ||||||||||   ||||||||||||||||||||||    
T  4441928 ttttaaaagagtattatttttagagagtgataaattaatgcttatgattaat---atatttttaattttaagaatat 4442001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 368233 - 368159
Alignment:
Q  18 ttttgaaagagt-gttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    |||| ||||||| ||| ||||||||||||||||||| |||| ||||||   || ||||||||||||||||| ||||||    
T  368233 ttttaaaagagtagtttttttagagaatgataaattaatgcatatgat---tactatatttttaattttaaaaatatt 368159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 6836574 - 6836505
Alignment:
Q  18 ttttgaaagagtgttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaat 91  Q
    |||||||||||| || | |||| |||||||||||| |||| |||||||||||   |||||||||||||||||||    
T  6836574 ttttgaaagagtttt-tgttagtgaatgataaattaatgcttatgattaata---tatttttaattttaagaat 6836505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 94
Target Start/End: Original strand, 24662636 - 24662726
Alignment:
Q  2 gtaaaatcattcacacttt-tgaaagagtgttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    |||||||| |||||| ||| |||||||||  | ||||||||||||||||||  |||| ||||||   |||||| ||||||||||||| ||||||    
T  24662636 gtaaaatctttcacattttctgaaagagtaattttttagagaatgataaatcaatgcttatgat---taatatttttttaattttaaaaatatt 24662726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 7182097 - 7182170
Alignment:
Q  18 ttttgaaagagtgttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    |||||||||| || | ||||||||||||||||| | || | ||||||   ||||||| |||||||||||||||||||    
T  7182097 ttttgaaagaatggttttttagagaatgataaactaatacttatgat---taatatacttttaattttaagaatatt 7182170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 94
Target Start/End: Complemental strand, 27143333 - 27143280
Alignment:
Q  38 agagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||| ||||||||| |||| |||||||||||   ||||||||||||||||||||||    
T  27143333 agagagtgataaattaatgcttatgattaata---tatttttaattttaagaatatt 27143280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 94
Target Start/End: Complemental strand, 31530178 - 31530121
Alignment:
Q  34 ttttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||||||||||||||||| || | |||||||   |||||| |||||||||||||||||||    
T  31530178 ttttagagaatgataaattaatacttatgatt---aatatacttttaattttaagaatatt 31530121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 94
Target Start/End: Complemental strand, 32060805 - 32060748
Alignment:
Q  34 ttttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||||||||||||||||| || | |||||||   |||||| |||||||||||||||||||    
T  32060805 ttttagagaatgataaattaatacttatgatt---aatatacttttaattttaagaatatt 32060748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 32648926 - 32648983
Alignment:
Q  34 ttttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||||||||||||||| | || | ||||||||||   |||||||||||||||||||||||    
T  32648926 ttttagagaatgataaactaatacttatgattaat---atatttttaattttaagaatatt 32648983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 94
Target Start/End: Complemental strand, 41844594 - 41844537
Alignment:
Q  34 ttttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||||||||||||||||| || | |||||||   |||||| |||||||||||||||||||    
T  41844594 ttttagagaatgataaattaatacttatgatt---aatatacttttaattttaagaatatt 41844537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 94
Target Start/End: Complemental strand, 53013746 - 53013689
Alignment:
Q  34 ttttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||||||||||||||||| |||  |||||||   ||||||||||||||||||| ||||||    
T  53013746 ttttagagaatgataaattaatgtttatgatt---aatatatttttaattttaacaatatt 53013689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 27485182 - 27485242
Alignment:
Q  31 ttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    |||||||||| ||||||||||  |||| ||||||   ||||||||||||||||||| |||||||    
T  27485182 ttattttagaaaatgataaatgaatgcttatgat---taatatatttttaattttatgaatatt 27485242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 31418862 - 31418922
Alignment:
Q  18 ttttgaaagagtgttattttagagaatgataaatttatgcgtatgattaataatatattttt 79  Q
    |||||||||||| ||  |||||||| ||||||||| |||| |||||||||| ||||||||||    
T  31418862 ttttgaaagagtatttgtttagagagtgataaattaatgcttatgattaat-atatattttt 31418922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 44 - 94
Target Start/End: Complemental strand, 48620438 - 48620391
Alignment:
Q  44 tgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||||||| |||| |||||||||||   ||||||||||||||||||||||    
T  48620438 tgataaattcatgcttatgattaata---tatttttaattttaagaatatt 48620391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 13258661 - 13258588
Alignment:
Q  18 ttttgaaagagtgttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    |||||||||||| || ||||||||||||||||||| |||| || |||   |||||||||||||||||||||| ||||    
T  13258661 ttttgaaagagtatttttttagagaatgataaattaatgcttacgat---taatatatttttaattttaagagtatt 13258588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 13537517 - 13537444
Alignment:
Q  18 ttttgaaagagtgttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||||||||||  | ||||||||||| ||||||| |||| |||||||   ||||||||||||||||||||||||||    
T  13537517 ttttgaaagagtaattttttagagaataataaattaatgcttatgatt---aatatatttttaattttaagaatatt 13537444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 13627065 - 13626992
Alignment:
Q  18 ttttgaaagagtgttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||||||||||  | ||||||||||| ||||||| |||| |||||||   ||||||||||||||||||||||||||    
T  13627065 ttttgaaagagtaattttttagagaataataaattaatgcttatgatt---aatatatttttaattttaagaatatt 13626992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 39194106 - 39194033
Alignment:
Q  18 ttttgaaagagtgttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||||||||||||| ||||||||||||||||| | |||  ||||||   | ||||||||||||| |||||||||||    
T  39194106 ttttgaaagagtgtttttttagagaatgataaactaatgtttatgat---tcatatatttttaatattaagaatatt 39194033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 6839720 - 6839780
Alignment:
Q  34 ttttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||||||||||||||| | || | ||| ||||||| ||||||||| ||||||||||||||    
T  6839720 ttttagagaatgataaactaatacttattattaatattatattttttattttaagaatatt 6839780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 10878691 - 10878761
Alignment:
Q  18 ttttgaaagagtgttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    |||||||||||| || ||||||||| ||||||||| ||   ||||||   |||||||||||||||||||| ||||||    
T  10878691 ttttgaaagagtatttttttagagagtgataaattaat---tatgat---taatatatttttaattttaaaaatatt 10878761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 23963148 - 23963085
Alignment:
Q  22 gaaagagtgttattttagagaatgataaatttatgcgtatgattaataatatatttttaatttta 86  Q
    |||||||| ||  |||||||| ||||||||| |||  |||||||||| |||||||||||||||||    
T  23963148 gaaagagtatttgtttagagagtgataaattaatgtttatgattaat-atatatttttaatttta 23963085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 92
Target Start/End: Complemental strand, 29584333 - 29584278
Alignment:
Q  34 ttttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaata 92  Q
    ||||||||||||||||||| |||| ||||||   || ||||||||||||||||| ||||    
T  29584333 ttttagagaatgataaattaatgcatatgat---tactatatttttaattttaaaaata 29584278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 68 - 96
Target Start/End: Complemental strand, 35616688 - 35616660
Alignment:
Q  68 taatatatttttaattttaagaatattgt 96  Q
    |||||||||||||||||||||||||||||    
T  35616688 taatatatttttaattttaagaatattgt 35616660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 40984996 - 40985051
Alignment:
Q  34 ttttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaata 92  Q
    ||||||||||||||||||| |||  ||||||   |||||||||||||||||||| ||||    
T  40984996 ttttagagaatgataaattaatgtttatgat---taatatatttttaattttaataata 40985051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 9684697 - 9684770
Alignment:
Q  18 ttttgaaagagtgttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||||||||||  | ||||||| ||||||||||| |||| ||||||   |||||||||||||||||||||||||||    
T  9684697 ttttgaaagagtaattttttagaaaatgataaattaatgcttatgat---taatatatttttaattttaagaatatt 9684770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 94
Target Start/End: Complemental strand, 6491341 - 6491286
Alignment:
Q  36 ttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||||||||||||||| |||| |||||||||||   ||||||||||||||||||||||    
T  6491341 ttagagaatgataaattaatgcttatgattaata---tatttttaattttaagaatatt 6491286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 2 - 94
Target Start/End: Original strand, 19389717 - 19389807
Alignment:
Q  2 gtaaaatcattcacactttt-gaaagagtgttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    |||||||| |||||| |||| |||||| |  | ||||||||||||||||||| |||| ||||||   |||||||||||||||||||| ||||||    
T  19389717 gtaaaatctttcacaatttttgaaagattaattttttagagaatgataaattaatgcttatgat---taatatatttttaattttaaaaatatt 19389807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 3081238 - 3081311
Alignment:
Q  18 ttttgaaagagtgttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    |||||||| ||| || ||| ||||| ||||||||| |||| ||||||||||   |||||||||||||||||||||||    
T  3081238 ttttgaaatagtattttttgagagagtgataaattgatgcttatgattaat---atatttttaattttaagaatatt 3081311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 4841615 - 4841688
Alignment:
Q  18 ttttgaaagagtgttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    |||| ||||||| || ||||| ||| ||||||||| |||| ||||||||||   |||||||||||||||||||||||    
T  4841615 tttttaaagagtatttttttatagagtgataaattaatgcttatgattaat---atatttttaattttaagaatatt 4841688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 35704952 - 35705025
Alignment:
Q  18 ttttgaaagagtgttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||||| |||| || ||||||| ||| ||||||| |||| ||||||||||   |||||||||||||||||||||||    
T  35704952 ttttgaatgagtattcttttagaaaatcataaattaatgcttatgattaat---atatttttaattttaagaatatt 35705025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 26018897 - 26018843
Alignment:
Q  37 tagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    |||||| ||||||||| |||| |||||||||||   ||||||||||||||||||||||    
T  26018897 tagagagtgataaattaatgcttatgattaata---tatttttaattttaagaatatt 26018843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 94
Target Start/End: Complemental strand, 9096470 - 9096413
Alignment:
Q  34 ttttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||||||||||||||||| |||  | |||||||||   ||||||||||||||||||||||    
T  9096470 ttttagagaatgataaattaatgtttttgattaata---tatttttaattttaagaatatt 9096413  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 94
Target Start/End: Complemental strand, 17093056 - 17092999
Alignment:
Q  34 ttttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||||||||||||||| |||| | |||||||   |||||| |||||||||||||||||||    
T  17093056 ttttagagaatgataaacttatacttatgatt---aatatacttttaattttaagaatatt 17092999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 17668040 - 17668113
Alignment:
Q  18 ttttgaaagagtgttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||||||||||  | |||||| |||||||||||| |||| |||| |   ||||||||||| |||||||||||||||    
T  17668040 ttttgaaagagtaattttttagggaatgataaattaatgcttatgct---taatatattttcaattttaagaatatt 17668113  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 94
Target Start/End: Complemental strand, 28154849 - 28154792
Alignment:
Q  34 ttttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||||||||||||||||| |||  |||||||   ||||||||||| ||||||||||||||    
T  28154849 ttttagagaatgataaattaatgtttatgatt---aatatattttttattttaagaatatt 28154792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 94
Target Start/End: Complemental strand, 32824807 - 32824750
Alignment:
Q  34 ttttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||||||||| ||||||| |||  |||||||||||   ||||||||||||||||||||||    
T  32824807 ttttagagaataataaattaatgtttatgattaata---tatttttaattttaagaatatt 32824750  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 94
Target Start/End: Complemental strand, 33718340 - 33718283
Alignment:
Q  34 ttttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||||||||||||||| | || | |||||||||||   ||||||||||||||||||||||    
T  33718340 ttttagagaatgataaactaatacttatgattaata---tatttttaattttaagaatatt 33718283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 44 - 94
Target Start/End: Original strand, 1935039 - 1935086
Alignment:
Q  44 tgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||||||| |||| ||||||||||   |||||||||||||||||||||||    
T  1935039 tgataaattaatgcttatgattaat---atatttttaattttaagaatatt 1935086  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 94
Target Start/End: Complemental strand, 33677184 - 33677125
Alignment:
Q  32 tattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||||||||| ||||||||| |||| |||||||||||   ||||||||||||||||||||||    
T  33677184 tattttagagagtgataaattaatgcttatgattaata---tatttttaattttaagaatatt 33677125  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 6695471 - 6695398
Alignment:
Q  18 ttttgaaagagtgttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatat 93  Q
    |||||||||||| || ||||||||||||||||||  |||| ||| |||||| ||| ||||||||||||||||||||    
T  6695471 ttttgaaagagtatttttttagagaatgataaatgaatgcttataattaat-ata-atttttaattttaagaatat 6695398  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 13120328 - 13120401
Alignment:
Q  18 ttttgaaagagtgttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||||||||||  | ||||||||||||||||||| ||| |||| ||   |||||||||||||||||||| ||||||    
T  13120328 ttttgaaagagtaattttttagagaatgataaattaatgagtataat---taatatatttttaattttaacaatatt 13120401  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 2502292 - 2502345
Alignment:
Q  38 agagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||| ||||||||| |||| ||||||||||   |||||||||||||||||||||||    
T  2502292 agagagtgataaattaatgcttatgattaat---atatttttaattttaagaatatt 2502345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 8439317 - 8439374
Alignment:
Q  34 ttttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||||||||||||||||| |||  ||||||   |||||||||||||||||||| ||||||    
T  8439317 ttttagagaatgataaattaatgtttatgat---taatatatttttaattttaacaatatt 8439374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 22817247 - 22817320
Alignment:
Q  18 ttttgaaagagtgttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    |||| ||||||| || || || ||||||||||||  |||| ||||||||||   |||||||||||||||||||||||    
T  22817247 ttttaaaagagtatttttataaagaatgataaatgaatgcttatgattaat---atatttttaattttaagaatatt 22817320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 33590251 - 33590308
Alignment:
Q  34 ttttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||||||||||||||||| |||| ||||||   || ||||||||||||||||| ||||||    
T  33590251 ttttagagaatgataaattaatgcatatgat---tactatatttttaattttaaaaatatt 33590308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 33939049 - 33939102
Alignment:
Q  38 agagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||||||||||||| |||  ||||||||||   |||||||||||||||||||||||    
T  33939049 agagaatgataaattaatgtttatgattaat---atatttttaattttaagaatatt 33939102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 6687870 - 6687925
Alignment:
Q  34 ttttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaata 92  Q
    ||||||||||||||||||| |||| ||||||   || ||||||||||||||||| ||||    
T  6687870 ttttagagaatgataaattaatgcatatgat---tactatatttttaattttaaaaata 6687925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0927 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0927
Description:

Target: scaffold0927; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 2816 - 2891
Alignment:
Q  18 ttttgaaagagtgttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatattgt 96  Q
    ||||||||||||||| ||| ||||||||||||| | || | ||||||   | ||||||||||||| |||||||||||||    
T  2816 ttttgaaagagtgttttttaagagaatgataaactaatacttatgat---tcatatatttttaatattaagaatattgt 2891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 92
Target Start/End: Complemental strand, 4305 - 4250
Alignment:
Q  34 ttttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaata 92  Q
    |||| |||||||||||||| |||| |||||||||||   ||||||||||||||||||||    
T  4305 ttttggagaatgataaattaatgcttatgattaata---tatttttaattttaagaata 4250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 92
Target Start/End: Complemental strand, 4636 - 4581
Alignment:
Q  34 ttttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaata 92  Q
    |||| |||||||||||||| |||| |||||||||||   ||||||||||||||||||||    
T  4636 ttttggagaatgataaattaatgcttatgattaata---tatttttaattttaagaata 4581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1763 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1763
Description:

Target: scaffold1763; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 526 - 583
Alignment:
Q  34 ttttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    |||||||||||| |||||| |||  ||||||||||   |||||||||||||||||||||||    
T  526 ttttagagaatgttaaattaatgtttatgattaat---atatttttaattttaagaatatt 583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0717 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 94
Target Start/End: Complemental strand, 1737 - 1680
Alignment:
Q  34 ttttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaatatt 94  Q
    ||||||||||||||||| | || | |||||||||||   ||||||||||||||||||||||    
T  1737 ttttagagaatgataaactaatacttatgattaata---tatttttaattttaagaatatt 1680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 30629 - 30557
Alignment:
Q  18 ttttgaaagagt-gttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaata 92  Q
    |||| ||||||| ||| ||||||||||||||||||| |||| ||||||   || ||||||||||||||||| ||||    
T  30629 ttttaaaagagtagtttttttagagaatgataaattaatgcatatgat---tactatatttttaattttaaaaata 30557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 37297 - 37225
Alignment:
Q  18 ttttgaaagagt-gttattttagagaatgataaatttatgcgtatgattaataatatatttttaattttaagaata 92  Q
    |||| ||||||| ||| ||||||||||||||||||| |||| ||||||   || ||||||||||||||||| ||||    
T  37297 ttttaaaagagtagtttttttagagaatgataaattaatgcatatgat---tactatatttttaattttaaaaata 37225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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