View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18341_low_9 (Length: 323)
Name: NF18341_low_9
Description: NF18341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18341_low_9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 20 - 323
Target Start/End: Complemental strand, 46367075 - 46366782
Alignment:
| Q |
20 |
gaaggcatgggcttgttttgtttccgcatgtagacatatggttatggttatg------taattaatattttcttttgctaataaaactagtatatagtac |
113 |
Q |
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| T |
46367075 |
gaaggcatgggcttgttttgtttccgcatgtagacatatggttatggttatggttatgtaatttatattttcttttgctaataaaactagtatatagtac |
46366976 |
T |
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| Q |
114 |
atgcaatttatatatctatcttcatttcatcacataaaagatgtagtactcctagcagattaaggacaaagatgatgaagactgtggatgatgggcaaga |
213 |
Q |
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| T |
46366975 |
atgcaatttatatatctatcttcatttcatcacataaaagatgtagtactcctagcagattaaggacaaagat----------------gatgggcaaga |
46366892 |
T |
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| Q |
214 |
ccggttccttttttgaacttcgggatttgtttttgcattgtcattgtgaacttgtagtactataaacaaattaaataatgtggatttgtttcacactatg |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46366891 |
ccggttccttttttgaacttcgggatttgtttttgcattgtcattgtgaacttgtagtactataaacaaattaaataatgtggatttgtttcacactatg |
46366792 |
T |
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