View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18342_low_3 (Length: 359)
Name: NF18342_low_3
Description: NF18342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18342_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 13 - 342
Target Start/End: Complemental strand, 25693645 - 25693315
Alignment:
| Q |
13 |
aatatcttaataatttgaaatatctaatctgatttggacaatttcaaatttcatccaatctaaacaacatgtatatctaaacacctttaaattttcaact |
112 |
Q |
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| T |
25693645 |
aatatcttaataatttgaaatatctaatctgatttaaacaatttcaaatttcattcaatctaaacaacatgtatatctaaacacctttaaattttcaact |
25693546 |
T |
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| Q |
113 |
tctatttaacacgtcat--------tatctttctcttcaaaccacatcatctatctatcacnnnnnnnnnccttctaaaagtctattggttttaggcgtt |
204 |
Q |
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| T |
25693545 |
tctatttaacacgtcattttatctctatctttctcttcaaaccacatcacctatctatcacttttttttttcttctaaaagtctattggttttaggtgtt |
25693446 |
T |
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| Q |
205 |
ctataaatcaattttccaatctaagttcatctaaatcccttaagatgttaagtgttaactatatatgtgccacgtcaaatcacaaaatgcccataacaaa |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25693445 |
ctataaatcaattttccaatctaagttcatctaaatcccttaaga-------tgttaactatatatgtgccacgtcaaatcacaaaatgcccataacaaa |
25693353 |
T |
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| Q |
305 |
caccaacagacataacaagacaacactgcctgtcacat |
342 |
Q |
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| T |
25693352 |
caccaacagacataacaagacaacactgcctgtcacat |
25693315 |
T |
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