View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18342_low_4 (Length: 233)
Name: NF18342_low_4
Description: NF18342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18342_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 216
Target Start/End: Complemental strand, 51548609 - 51548406
Alignment:
| Q |
13 |
aagaagtagaaccaatccaagcatcaccgataataaactctgaaacagtgaaattatttgcactatcaaaatccattaaatgataccctaaccattttac |
112 |
Q |
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| T |
51548609 |
aagaagtagaaccaatccaagcatcaccgataataaactctgaaacagtgaaattatttgcactatcaaaatccattaaatgataccctaaccattttac |
51548510 |
T |
|
| Q |
113 |
tcggttatccgtcgcagaaccaggtccataatttgcaaactcaccataatacaaagtgtccaaccctttatcatcatcagaagaccatttcgtccatccc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51548509 |
tcggttatccgtcgcagaaccaggtccataatttgcaaactcaccataatacaaagtgtccaaccctttatcatcatcagaagaccatttcgtccatccc |
51548410 |
T |
|
| Q |
213 |
attg |
216 |
Q |
| |
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|||| |
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| T |
51548409 |
attg |
51548406 |
T |
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