View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18343_high_1 (Length: 579)

Name: NF18343_high_1
Description: NF18343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18343_high_1
NF18343_high_1
[»] chr5 (16 HSPs)
chr5 (26-560)||(14232365-14232903)
chr5 (347-422)||(14222667-14222742)
chr5 (206-345)||(557766-557905)
chr5 (213-345)||(41997719-41997852)
chr5 (206-345)||(12044016-12044156)
chr5 (455-530)||(14234692-14234769)
chr5 (213-345)||(42002510-42002643)
chr5 (206-345)||(562538-562675)
chr5 (206-345)||(32460429-32460569)
chr5 (206-345)||(36936395-36936534)
chr5 (206-345)||(36941149-36941288)
chr5 (206-345)||(21322923-21323059)
chr5 (215-345)||(3666953-3667081)
chr5 (206-311)||(13300405-13300508)
chr5 (268-345)||(24435066-24435142)
chr5 (302-342)||(34707183-34707223)
[»] chr8 (6 HSPs)
chr8 (206-335)||(43301638-43301768)
chr8 (206-350)||(31448744-31448889)
chr8 (206-345)||(4237226-4237365)
chr8 (206-345)||(4241965-4242104)
chr8 (206-345)||(8330264-8330400)
chr8 (268-345)||(37772850-37772926)
[»] scaffold0182 (1 HSPs)
scaffold0182 (206-345)||(8766-8906)
[»] chr3 (7 HSPs)
chr3 (206-345)||(8884240-8884380)
chr3 (206-345)||(8888986-8889126)
chr3 (206-345)||(3673636-3673775)
chr3 (206-345)||(8070749-8070886)
chr3 (206-345)||(3034714-3034853)
chr3 (206-345)||(3693690-3693829)
chr3 (205-260)||(45903546-45903599)
[»] chr1 (6 HSPs)
chr1 (206-345)||(3095159-3095298)
chr1 (224-345)||(23254091-23254212)
chr1 (211-344)||(27307360-27307491)
chr1 (288-335)||(8273071-8273118)
chr1 (269-350)||(41096832-41096912)
chr1 (268-344)||(17213032-17213108)
[»] chr7 (13 HSPs)
chr7 (211-345)||(9649846-9649980)
chr7 (268-335)||(23866854-23866921)
chr7 (206-345)||(27257291-27257427)
chr7 (268-345)||(13343313-13343390)
chr7 (213-345)||(47102612-47102740)
chr7 (211-345)||(40864283-40864416)
chr7 (213-345)||(10499013-10499143)
chr7 (213-345)||(10504042-10504172)
chr7 (213-260)||(11017054-11017101)
chr7 (268-347)||(13346247-13346326)
chr7 (270-345)||(40997729-40997804)
chr7 (268-345)||(40863962-40864038)
chr7 (211-243)||(30259253-30259285)
[»] chr4 (6 HSPs)
chr4 (211-345)||(13520871-13521005)
chr4 (206-345)||(3992655-3992791)
chr4 (268-334)||(31297421-31297488)
chr4 (206-345)||(34561479-34561615)
chr4 (211-345)||(7899840-7899970)
chr4 (281-345)||(39320702-39320766)
[»] chr2 (4 HSPs)
chr2 (206-345)||(10159603-10159741)
chr2 (206-345)||(6296798-6296934)
chr2 (268-345)||(30659288-30659366)
chr2 (213-345)||(35602675-35602802)
[»] scaffold0045 (1 HSPs)
scaffold0045 (211-345)||(83983-84118)
[»] scaffold0628 (2 HSPs)
scaffold0628 (268-345)||(5798-5875)
scaffold0628 (214-345)||(7512-7643)
[»] chr6 (4 HSPs)
chr6 (268-345)||(15509414-15509491)
chr6 (269-330)||(2881746-2881807)
chr6 (211-331)||(29157083-29157204)
chr6 (269-330)||(2862443-2862504)
[»] scaffold0041 (1 HSPs)
scaffold0041 (206-345)||(34607-34743)
[»] scaffold0008 (1 HSPs)
scaffold0008 (268-335)||(257768-257835)
[»] scaffold0070 (2 HSPs)
scaffold0070 (206-345)||(59480-59615)
scaffold0070 (206-345)||(63682-63817)
[»] scaffold0131 (1 HSPs)
scaffold0131 (213-335)||(8630-8751)


Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 26 - 560
Target Start/End: Complemental strand, 14232903 - 14232365
Alignment:
Q  26 tattatacattgtccctatatcaattgagctcagctcacgaggaataggacnnnnnnnnntgcacttatttattaa----taataataagtcttttgttg 121  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||         |||||||||||| |||    ||||||||||||||||||||    
T  14232903 tattatacattgtccctatatcaattgagctaagctcacgaggaataggacaaaaaaa--tgcacttatttaataaataataataataagtcttttgttg 14232806  T
Q  122 attagagtaaaaatagtnnnnnnnntgcactta-tttaa-taattattaataagtctcgtgttggctgacatgattatgtaccctccccctactatataa 219  Q
    ||||||||||||||||           || ||| ||||| ||||||||||     || || ||||||||||| ||||||| ||||| |||||||||||||    
T  14232805 attagagtaaaaatagccaacaca---cagttaatttaagtaattattaag----cttgtattggctgacataattatgttccctctccctactatataa 14232713  T
Q  220 acactactaatgtatgtgatctatccaatatgggacttccannnnnnn-caattcacacaatactagtactacccaatatggaaatttgtgtttagtttt 318  Q
    |||||||||||||||||||||||| ||||||||||||| ||        ||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  14232712 acactactaatgtatgtgatctattcaatatgggactttcattttttttcaattcacacaatactagtgctacccaatgtggaaatttgtgtttagtttt 14232613  T
Q  319 ttaactcaatttccacatttgttccaatagttcctagcagaggtgaaaccaaaagatccgttacttgtcatcagaccttgtttccttgctttatctctgt 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14232612 ttaactcaatttccacatttgttccaatagttcctagcagaggtgaaaccaaaagatccgttacttgtcatcagaccttgtttccttgctttatctctgt 14232513  T
Q  419 cactcagttcctagattcgggtttatgaagcggatca------cttggagtgttgtttgtcatatagaaaagttaaagtatttggaatgaaaaggtaatg 512  Q
    |||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  14232512 cactcagttcctagattcgggtttatgaagcggatcacttgtacttggagtgttgtttgtcatatagaaaagttaaagtatttggaatgaaaaggtaagg 14232413  T
Q  513 tattataagattattaattgcaagtctttatggtttgcttgtttacct 560  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14232412 tattataagattattaattgcaagtctttatggtttgcttgcttacct 14232365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 347 - 422
Target Start/End: Complemental strand, 14222742 - 14222667
Alignment:
Q  347 agttcctagcagaggtgaaaccaaaagatccgttacttgtcatcagaccttgtttccttgctttatctctgtcact 422  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||    
T  14222742 agttcctagcaaaggtgaaaccaaaagatccgttacttctcatcagaccttgttcccttcctttatctctgtcact 14222667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 206 - 345
Target Start/End: Original strand, 557766 - 557905
Alignment:
Q  206 cccctactatataaacactactaatgtatgtgatctatccaatatgggacttccannnnnnncaattcacacaatactagtactacccaatatggaaatt 305  Q
    |||| |||||||||||||||||||||| |||| || |||| || |||||||||||       |||||||||||| |||||| |||||||| |||| ||||    
T  557766 cccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttccacttttt-caattcacacaacactagttctacccaacatgggaatt 557864  T
Q  306 tgtgtttagt-tttttaactcaatttccacatttgttccaa 345  Q
    |||||||||| ||||||||||||||||||||  ||||||||    
T  557865 tgtgtttagtctttttaactcaatttccacacatgttccaa 557905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 213 - 345
Target Start/End: Original strand, 41997719 - 41997852
Alignment:
Q  213 tatataaacactactaatgtatgtgatctatccaatatgggacttccannnnnnncaattcacacaatactagtactacccaatatggaaatttgtgttt 312  Q
    |||||||||||||||||||| |||| || |||| || |||||||||||       |||||||||||| |||||| |||||||| |||| |||||||||||    
T  41997719 tatataaacactactaatgtgtgtgttccatccgatgtgggacttccacttttttcaattcacacaacactagttctacccaacatgggaatttgtgttt 41997818  T
Q  313 agt-tttttaactcaatttccacatttgttccaa 345  Q
    ||| ||||||||||||||| ||||  ||||||||    
T  41997819 agtctttttaactcaattttcacacatgttccaa 41997852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 206 - 345
Target Start/End: Complemental strand, 12044156 - 12044016
Alignment:
Q  206 cccctactatataaacactactaatgtatgtgatctatccaatatgggacttccannnnnnncaattcacacaatactagtactacccaatatggaaatt 305  Q
    |||| |||||||||||||||||||||| |||| || |||| ||  ||||||| ||       |||||||||||| |||||| |||||||| |||| ||||    
T  12044156 cccccactatataaacactactaatgtgtgtgttccatccgatgagggactttcacttttttcaattcacacaacactagttctacccaacatgggaatt 12044057  T
Q  306 tgtgtttagt-tttttaactcaatttccacatttgttccaa 345  Q
    |||||||||| ||||||||||||||||||||  ||||||||    
T  12044056 tgtgtttagtctttttaactcaatttccacacatgttccaa 12044016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 455 - 530
Target Start/End: Complemental strand, 14234769 - 14234692
Alignment:
Q  455 acttggagtgttgtttgtcatatagaaaagttaaagtatttggaa--tgaaaaggtaatgtattataagattattaat 530  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||  ||||||||||| |||||||||||||||||||    
T  14234769 acttggagtgttgattgtcatatagaaaagttaaggtatttggaacttgaaaaggtaaggtattataagattattaat 14234692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 213 - 345
Target Start/End: Original strand, 42002510 - 42002643
Alignment:
Q  213 tatataaacactactaatgtatgtgatctatccaatatgggacttccannnnnnncaattcacacaatactagtactacccaatatggaaatttgtgttt 312  Q
    |||||||||||||||||||| |||| || |||| || |||||||||||       |||||||||||| |||||| |||||||| ||   |||||||||||    
T  42002510 tatataaacactactaatgtgtgtgttccatccgatgtgggacttccacttttttcaattcacacaacactagttctacccaacatatgaatttgtgttt 42002609  T
Q  313 agt-tttttaactcaatttccacatttgttccaa 345  Q
    ||| ||||||||||||||||||||  ||||||||    
T  42002610 agtctttttaactcaatttccacacatgttccaa 42002643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 206 - 345
Target Start/End: Original strand, 562538 - 562675
Alignment:
Q  206 cccctactatataaacactactaatgtatgtgatctatccaatatgggacttccannnnnnncaattcacacaatactagtactacccaatatggaaatt 305  Q
    |||| |||||||||||||||||||||| |||  || |||| || |||||||||||       |||||||||||| |||||| |||||||| |||| ||||    
T  562538 cccccactatataaacactactaatgtgtgt--tccatccgatgtgggacttccacttttt-caattcacacaacactagttctacccaacatgggaatt 562634  T
Q  306 tgtgtttagt-tttttaactcaatttccacatttgttccaa 345  Q
    |||||||||| ||||||||||||||||||||  ||||||||    
T  562635 tgtgtttagtctttttaactcaatttccacacatgttccaa 562675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 206 - 345
Target Start/End: Complemental strand, 32460569 - 32460429
Alignment:
Q  206 cccctactatataaacactactaatgtatgtgatctatccaatatgggacttccannnnnnncaattcacacaatactagtactacccaatatggaaatt 305  Q
    |||| |||||||||||||||||||||| |||| || |||| || ||| |||||||       |||||||||||| |||||| |||||||| |||| ||||    
T  32460569 cccccactatataaacactactaatgtgtgtgttccatccgatgtggtacttccacttttttcaattcacacaacactagttctacccaacatgggaatt 32460470  T
Q  306 tgtgtttagt-tttttaactcaatttccacatttgttccaa 345  Q
    |||| ||||| |||||||||||||||| |||  ||||||||    
T  32460469 tgtgattagtctttttaactcaatttcaacacatgttccaa 32460429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 206 - 345
Target Start/End: Complemental strand, 36936534 - 36936395
Alignment:
Q  206 cccctactatataaacactactaatgtatgtgatctatccaatatgggacttccannnnnnncaattcacacaatactagtactacccaatatggaaatt 305  Q
    ||||||||||||||||||||||||||| |||| || || | || || ||||||||       |||||||||||| |||||| |||||||| |||| ||||    
T  36936534 cccctactatataaacactactaatgtgtgtgttccattcgatgtgagacttccactgttt-caattcacacaacactagttctacccaacatgggaatt 36936436  T
Q  306 tgtgtttagt-tttttaactcaatttccacatttgttccaa 345  Q
    |||||||||| | ||||||||||||||||||  ||||||||    
T  36936435 tgtgtttagtctgtttaactcaatttccacacatgttccaa 36936395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 206 - 345
Target Start/End: Complemental strand, 36941288 - 36941149
Alignment:
Q  206 cccctactatataaacactactaatgtatgtgatctatccaatatgggacttccannnnnnncaattcacacaatactagtactacccaatatggaaatt 305  Q
    |||| |||||||||||||||||||||| |||| || |||| || |||||||||||       ||||||||| || |||||| |||||||| |||| ||||    
T  36941288 cccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttccacttttt-caattcacagaacactagttctacccaacatgggaatt 36941190  T
Q  306 tgtgtttagt-tttttaactcaatttccacatttgttccaa 345  Q
    |||||||||| | ||||||||||||||||||  ||||||||    
T  36941189 tgtgtttagtctgtttaactcaatttccacacatgttccaa 36941149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 206 - 345
Target Start/End: Complemental strand, 21323059 - 21322923
Alignment:
Q  206 cccctactatataaacactactaatgtatgtgatctatccaatatgggacttccannnnnnncaattcacacaatactagtactacccaatatggaaatt 305  Q
    |||| ||||||||||||||||||||||  |||||| |||| || |||||||||||       |||||||||| | |||||| ||||||| | ||| ||||    
T  21323059 cccccactatataaacactactaatgt--gtgatccatccgatgtgggacttccacttttttcaattcacactacactagttctacccattgtgggaatt 21322962  T
Q  306 tgtgtttagttttttaactcaatttccacatttgttccaa 345  Q
    ||||||||||   || ||||||||||||||| ||||||||    
T  21322961 tgtgtttagtcaatt-actcaatttccacatatgttccaa 21322923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 345
Target Start/End: Original strand, 3666953 - 3667081
Alignment:
Q  215 tataaacactactaatgtatgtgatctatccaatatgggacttccannnnnnncaattcacacaatactagtactacccaatatggaaatttgtgtttag 314  Q
    |||||||||||||||||  |||  || |||| || |||||||||||       ||||| |||||| |||| | |||| ||| ||| ||||||||||||||    
T  3666953 tataaacactactaatgcttgt--tccatccgatgtgggacttccacctttttcaatttacacaacactatttctacacaacatgaaaatttgtgtttag 3667050  T
Q  315 ttttttaactcaatttccacatttgttccaa 345  Q
    | |||| ||||||||||||||  ||||||||    
T  3667051 tctttttactcaatttccacacatgttccaa 3667081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 311
Target Start/End: Complemental strand, 13300508 - 13300405
Alignment:
Q  206 cccctactatataaacactactaatgtatgtgatctatccaatatgggacttccannnnnnncaattcacacaatactagtactacccaatatggaaatt 305  Q
    |||| |||||||||||||||||||||  ||||||| |||  || |||||||||||       |||||||||| | |||||| ||||||| | ||| ||||    
T  13300508 cccccactatataaacactactaatg--tgtgatccatctgatgtgggacttccacttttttcaattcacactacactagttctacccattgtgggaatt 13300411  T
Q  306 tgtgtt 311  Q
    ||||||    
T  13300410 tgtgtt 13300405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 345
Target Start/End: Complemental strand, 24435142 - 24435066
Alignment:
Q  268 caattcacacaatactagtactacccaatatggaaatttgtgtttagttttttaactcaatttccacatttgttccaa 345  Q
    |||||||||| | |||||| ||||||| | ||| ||||||||||||||   || ||||||||||||||| ||||||||    
T  24435142 caattcacactacactagttctacccattgtgggaatttgtgtttagtcaatt-actcaatttccacatatgttccaa 24435066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 342
Target Start/End: Complemental strand, 34707223 - 34707183
Alignment:
Q  302 aatttgtgtttagttttttaactcaatttccacatttgttc 342  Q
    |||||||||||||| |||||||||||||| ||||| |||||    
T  34707223 aatttgtgtttagtcttttaactcaattttcacatatgttc 34707183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 7e-29; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 206 - 335
Target Start/End: Complemental strand, 43301768 - 43301638
Alignment:
Q  206 cccctactatataaacactactaatgtatgtgatctatccaatatgggacttccannnnnnncaattcacacaatactagtactacccaatatggaaatt 305  Q
    |||| ||||||||||||||||||||||||||| || |||| || | |||||||||       |||||||||||| |||||| |||||||| |||||||||    
T  43301768 cccccactatataaacactactaatgtatgtgttccatccgatgtaggacttccacttttttcaattcacacaacactagttctacccaagatggaaatt 43301669  T
Q  306 tgtgtttagt-tttttaactcaatttccaca 335  Q
    |||||||||| ||||||||||||||||||||    
T  43301668 tgtgtttagtctttttaactcaatttccaca 43301638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 206 - 350
Target Start/End: Complemental strand, 31448889 - 31448744
Alignment:
Q  206 cccctactatataaacactactaatgtatgtgatctatccaatatgggacttccannnnnnncaattcacacaatactagtactacccaatatggaaatt 305  Q
    |||| |||||||||||||||||||||| |||| || |||| || |||||||||||       |||||||||||| |||||| |||||||| |||| ||||    
T  31448889 cccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttccacttttttcaattcacacaacactagttctacccaacatgggaatt 31448790  T
Q  306 tgtgtttagt-tttttaactcaatttccacatttgttccaatagtt 350  Q
    |||||||||| ||||||||||||||||||||  |||||||| ||||    
T  31448789 tgtgtttagtctttttaactcaatttccacacatgttccaacagtt 31448744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 206 - 345
Target Start/End: Complemental strand, 4237365 - 4237226
Alignment:
Q  206 cccctactatataaacactactaatgtatgtgatctatccaatatgggacttccannnnnnncaattcacacaatactagtactacccaatatggaaatt 305  Q
    |||| |||||||||||||||||||||| |||| || |||| || |||||||||||       |||||||||||| |||||| |||||||| |||| ||||    
T  4237365 cccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttccacttttt-caattcacacaacactagttctacccaacatgggaatt 4237267  T
Q  306 tgtgtttagt-tttttaactcaatttccacatttgttccaa 345  Q
    |||||||||| | ||||||||||||||||||  ||||||||    
T  4237266 tgtgtttagtctgtttaactcaatttccacacatgttccaa 4237226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 206 - 345
Target Start/End: Complemental strand, 4242104 - 4241965
Alignment:
Q  206 cccctactatataaacactactaatgtatgtgatctatccaatatgggacttccannnnnnncaattcacacaatactagtactacccaatatggaaatt 305  Q
    |||| |||||||||||||||||||||| |||| || |||| || |||||||||||       |||||||||||| |||||| |||||||| |||| ||||    
T  4242104 cccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttccacttttt-caattcacacaacactagttctacccaacatgggaatt 4242006  T
Q  306 tgtgtttagt-tttttaactcaatttccacatttgttccaa 345  Q
    |||||||||| | ||||||||||||||||||  ||||||||    
T  4242005 tgtgtttagtctgtttaactcaatttccacacatgttccaa 4241965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 206 - 345
Target Start/End: Complemental strand, 8330400 - 8330264
Alignment:
Q  206 cccctactatataaacactactaatgtatgtgatctatccaatatgggacttccannnnnnncaattcacacaatactagtactacccaatatggaaatt 305  Q
    ||||||||||||||||||||||||||  ||||||| |||| || |||||||| ||       |||||||||| || ||||| ||||||| | ||| ||||    
T  8330400 cccctactatataaacactactaatg--tgtgatccatccgatgtgggactttcacttttttcaattcacactatgctagttctacccattgtgggaatt 8330303  T
Q  306 tgtgtttagttttttaactcaatttccacatttgttccaa 345  Q
    ||||||||||   || ||||||||||||||| ||||||||    
T  8330302 tgtgtttagtcaatt-actcaatttccacatatgttccaa 8330264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 345
Target Start/End: Original strand, 37772850 - 37772926
Alignment:
Q  268 caattcacacaatactagtactacccaatatggaaatttgtgtttagttttttaactcaatttccacatttgttccaa 345  Q
    |||||||||| | |||||| ||||||| | ||| ||||||||||||||   || ||||||||||||||| ||||||||    
T  37772850 caattcacactacactagttctacccattgtgggaatttgtgtttagtcaatt-actcaatttccacatatgttccaa 37772926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 206 - 345
Target Start/End: Complemental strand, 8906 - 8766
Alignment:
Q  206 cccctactatataaacactactaatgtatgtgatctatccaatatgggacttccannnnnnncaattcacacaatactagtactacccaatatggaaatt 305  Q
    |||| |||||||||||||||||||||| |||| || |||| || ||||| |||||       |||||||||||| |||||| |||||||| |||| ||||    
T  8906 cccccactatataaacactactaatgtgtgtgttccatccgatgtgggatttccacttttttcaattcacacaacactagttctacccaacatgggaatt 8807  T
Q  306 tgtgtttagt-tttttaactcaatttccacatttgttccaa 345  Q
    |||||||||| ||||||||||||||||||||  ||||||||    
T  8806 tgtgtttagtctttttaactcaatttccacacatgttccaa 8766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 3e-25; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 206 - 345
Target Start/End: Original strand, 8884240 - 8884380
Alignment:
Q  206 cccctactatataaacactactaatgtatgtgatctatccaatatgggacttccannnnnnncaattcacacaatactagtactacccaatatggaaatt 305  Q
    |||| |||||||||||||||||||||| |||| || |||| || |||||||||||       |||||||||||| |||||| |||||||| |||| ||||    
T  8884240 cccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttccatttttttcaattcacacaacactagttctacccaacatgggaatt 8884339  T
Q  306 tgtgtttagt-tttttaactcaatttccacatttgttccaa 345  Q
    |||||||||| ||||||||||| ||||||||  ||||||||    
T  8884340 tgtgtttagtctttttaactcagtttccacacatgttccaa 8884380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 206 - 345
Target Start/End: Original strand, 8888986 - 8889126
Alignment:
Q  206 cccctactatataaacactactaatgtatgtgatctatccaatatgggacttccannnnnnncaattcacacaatactagtactacccaatatggaaatt 305  Q
    |||| |||||||||||||||||||||| |||| || |||| || |||||||||||       |||||||||||| |||| | |||||||| |||| ||||    
T  8888986 cccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttccacttttttcaattcacacaacactaattctacccaacatgggaatt 8889085  T
Q  306 tgtgtttagt-tttttaactcaatttccacatttgttccaa 345  Q
    |||||||||| ||||||||||| ||||||||  ||||||||    
T  8889086 tgtgtttagtctttttaactcagtttccacacatgttccaa 8889126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 206 - 345
Target Start/End: Original strand, 3673636 - 3673775
Alignment:
Q  206 cccctactatataaacactactaatgtatgtgatctatccaatatgggacttccannnnnnncaattcacacaatactagtactacccaatatggaaatt 305  Q
    |||| |||||||||||||||||||||| |||| || |||| || |||||||||||       |||||||||||| |||||| |||||||| |||| ||||    
T  3673636 cccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttccacttttt-caattcacacaacactagttctacccaacatgggaatt 3673734  T
Q  306 tgtgtttagt-tttttaactcaatttccacatttgttccaa 345  Q
    |||||||||| | ||||||||||||||||||  ||||||||    
T  3673735 tgtgtttagtctgtttaactcaatttccacacatgttccaa 3673775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 206 - 345
Target Start/End: Original strand, 8070749 - 8070886
Alignment:
Q  206 cccctactatataaacactactaatgtatgtgatctatccaatatgggacttccannnnnnncaattcacacaatactagtactacccaatatggaaatt 305  Q
    |||| |||||||||||||||||||||| |||  || |||| || |||||||||||       |||||||||||| |||||| |||||||| |||| ||||    
T  8070749 cccccactatataaacactactaatgtgtgt--tccatccgatgtgggacttccatttttt-caattcacacaacactagttctacccaacatgggaatt 8070845  T
Q  306 tgtgtttagt-tttttaactcaatttccacatttgttccaa 345  Q
    |||||||||| ||||||||||||||||||||  ||||||||    
T  8070846 tgtgtttagtctttttaactcaatttccacacatgttccaa 8070886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 206 - 345
Target Start/End: Original strand, 3034714 - 3034853
Alignment:
Q  206 cccctactatataaacactactaatgtatgtgatctatccaatatgggacttccannnnnnncaattcacacaatactagtactacccaatatggaaatt 305  Q
    |||| |||||||||||||||||||||| |||  || |||| || |||||||||||       |||||||||||| |||||| |||||||| |||| ||||    
T  3034714 cccccactatataaacactactaatgtgtgtattccatccgatgtgggacttccacttttt-caattcacacaacactagttctacccaacatgggaatt 3034812  T
Q  306 tgtgtttagt-tttttaactcaatttccacatttgttccaa 345  Q
    |||||||||| | ||||||||||||||||||  ||||||||    
T  3034813 tgtgtttagtctgtttaactcaatttccacacatgttccaa 3034853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 206 - 345
Target Start/End: Original strand, 3693690 - 3693829
Alignment:
Q  206 cccctactatataaacactactaatgtatgtgatctatccaatatgggacttccannnnnnncaattcacacaatactagtactacccaatatggaaatt 305  Q
    |||| |||||||||||||||||||||| |||| || |||| || |||||||||||       |||||||||||| | |||| |||||||| |||  ||||    
T  3693690 cccccactatataaacactactaatgtgtgtgttccatccgatgtgggacttccacttttt-caattcacacaacattagttctacccaacatgagaatt 3693788  T
Q  306 tgtgtttagt-tttttaactcaatttccacatttgttccaa 345  Q
    |||||||||| | ||||||||||||||||||  ||||||||    
T  3693789 tgtgtttagtctgtttaactcaatttccacacatgttccaa 3693829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 205 - 260
Target Start/End: Complemental strand, 45903599 - 45903546
Alignment:
Q  205 ccccctactatataaacactactaatgtatgtgatctatccaatatgggacttcca 260  Q
    ||||| |||||||||||||||||||||  |||||||||||| || || ||||||||    
T  45903599 ccccccactatataaacactactaatg--tgtgatctatccgatgtgagacttcca 45903546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 206 - 345
Target Start/End: Original strand, 3095159 - 3095298
Alignment:
Q  206 cccctactatataaacactactaatgtatgtgatctatccaatatgggacttccannnnnnncaattcacacaatactagtactacccaatatggaaatt 305  Q
    |||| |||||||||||||||||||||| |||| |  |||| || |||||||||||       |||||||||||| |||||| |||||||| |||||||||    
T  3095159 cccccactatataaacactactaatgtgtgtgtttcatccgatgtgggacttccacttttt-caattcacacaacactagttctacccaacatggaaatt 3095257  T
Q  306 tgtgtttagttt-tttaactcaatttccacatttgttccaa 345  Q
    |||||||||||| ||||||||||||||||||  ||||||||    
T  3095258 tgtgtttagtttgtttaactcaatttccacacatgttccaa 3095298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 224 - 345
Target Start/End: Complemental strand, 23254212 - 23254091
Alignment:
Q  224 tactaatgtatgtgatctatccaatatgggacttccannnnnnncaattcacacaatactagtactacccaatatggaaatttgtgtttagttttttaac 323  Q
    ||||||||| ||||||||||||||| |||||||||||       |||||||||||| ||||||  || |||||   |||||||||||||| | |||||||    
T  23254212 tactaatgtgtgtgatctatccaatttgggacttccactcttttcaattcacacaagactagttttatccaatgaagaaatttgtgtttactcttttaac 23254113  T
Q  324 tcaatttccacatttgttccaa 345  Q
    | |||||| |||  ||||||||    
T  23254112 taaatttcgacacgtgttccaa 23254091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 211 - 344
Target Start/End: Complemental strand, 27307491 - 27307360
Alignment:
Q  211 actatataaacactactaatgtatgtgatctatccaatatgggacttccannnnnnncaattcacacaatactagtactacccaatatggaaatttgtgt 310  Q
    ||||||||||| |||||||| |  || ||| ||||||||| |||||||||       ||||||||||||  ||||  ||| ||||| ||| |||||||||    
T  27307491 actatataaactctactaatatgggttatccatccaatataggacttccacttttttcaattcacacaa--ctaggtctatccaatgtgggaatttgtgt 27307394  T
Q  311 ttagttttttaactcaatttccacatttgttcca 344  Q
    ||||| ||||| |||||| ||||||  |||||||    
T  27307393 ttagtcttttacctcaatatccacacatgttcca 27307360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 335
Target Start/End: Complemental strand, 8273118 - 8273071
Alignment:
Q  288 ctacccaatatggaaatttgtgtttagttttttaactcaatttccaca 335  Q
    ||||||||  ||| |||||||||||| |||||||||||||||||||||    
T  8273118 ctacccaacgtgggaatttgtgtttatttttttaactcaatttccaca 8273071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 350
Target Start/End: Complemental strand, 41096912 - 41096832
Alignment:
Q  269 aattcacacaatactagtactacccaatatggaaatttgtgtttagttttttaactcaatttccacatttgttccaatagtt 350  Q
    ||||||||| | |||||| ||||||| | ||||||||||||||||||   || |||||||||| |||| |||||||| ||||    
T  41096912 aattcacactacactagttctacccattgtggaaatttgtgtttagtcaatt-actcaatttctacatatgttccaacagtt 41096832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 344
Target Start/End: Complemental strand, 17213108 - 17213032
Alignment:
Q  268 caattcacacaatactagtactacccaatatggaaatttgtgtttagttttttaactcaatttccacatttgttcca 344  Q
    |||||||||||| ||| || ||||| || || ||||||||||| || | |||||||||||||| ||||  |||||||    
T  17213108 caattcacacaacacttgttctacctaagatagaaatttgtgtctaatcttttaactcaattttcacacatgttcca 17213032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 211 - 345
Target Start/End: Complemental strand, 9649980 - 9649846
Alignment:
Q  211 actatataaacactactaatgtatgtgatctatccaatatgggacttccannnnnnncaattcacacaatactagtactacccaatatggaaatttgtgt 310  Q
    |||||||||||||||||||||| |||  |  |||| || ||| |||||||       |||||||||||| |||||| |||||||| |||| |||||||||    
T  9649980 actatataaacactactaatgtgtgtatttcatccgatgtggaacttccacttttttcaattcacacaacactagttctacccaacatgggaatttgtgt 9649881  T
Q  311 ttagttttttaactcaatttccacatttgttccaa 345  Q
    ||||| |||||||||||||||||||  ||||||||    
T  9649880 ttagtcttttaactcaatttccacacatgttccaa 9649846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 268 - 335
Target Start/End: Original strand, 23866854 - 23866921
Alignment:
Q  268 caattcacacaatactagtactacccaatatggaaatttgtgtttagttttttaactcaatttccaca 335  Q
    |||||||||||| |||||| |||||||| |||| |||||||||||||| |||||||||||||| ||||    
T  23866854 caattcacacaacactagttctacccaacatgggaatttgtgtttagtcttttaactcaattttcaca 23866921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 206 - 345
Target Start/End: Original strand, 27257291 - 27257427
Alignment:
Q  206 cccctactatataaacactactaatgtatgtgatctatccaatatgggacttccannnnnnncaattcacacaatactagtactacccaatatggaaatt 305  Q
    |||| ||||||||||||||||||||||  |||||| |||  || |||||||||||       |||||||||| | |||||| ||||||| | ||| ||||    
T  27257291 cccccactatataaacactactaatgt--gtgatccatctgatgtgggacttccacttttttcaattcacactacactagttctacccattgtgggaatt 27257388  T
Q  306 tgtgtttagttttttaactcaatttccacatttgttccaa 345  Q
    ||||||||||   || ||||||||||||||| ||||||||    
T  27257389 tgtgtttagtcaatt-actcaatttccacatatgttccaa 27257427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 268 - 345
Target Start/End: Complemental strand, 13343390 - 13343313
Alignment:
Q  268 caattcacacaatactagtactacccaatatggaaatttgtgtttagttttttaactcaatttccacatttgttccaa 345  Q
    |||||||||||| |||||| ||||||||  || |||||||||||| || |||||| ||||||||||||  ||||||||    
T  13343390 caattcacacaacactagttctacccaacgtgaaaatttgtgttttgtcttttaattcaatttccacacatgttccaa 13343313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 345
Target Start/End: Original strand, 47102612 - 47102740
Alignment:
Q  213 tatataaacactactaatgtatgtgatctatccaatatgggacttccannnnnnncaattcacacaatactagtactacccaatatggaaatttgtgttt 312  Q
    ||||||||||||||| |||| |||| || ||||  |||||||||||||       ||||| |||||| ||     |||||||| |||| |||||||||||    
T  47102612 tatataaacactactgatgtgtgtgttccatccgctatgggacttccacttttttcaatttacacaacac-----ctacccaacatgggaatttgtgttt 47102706  T
Q  313 agt-tttttaactcaatttccacatttgttccaa 345  Q
    ||| ||||||||||||||||||||  ||||||||    
T  47102707 agtctttttaactcaatttccacacatgttccaa 47102740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 211 - 345
Target Start/End: Complemental strand, 40864416 - 40864283
Alignment:
Q  211 actatataaacactactaatgtatgtgatctatccaatatgggacttccannnnnnn--caattcacacaatactagtactacccaatatggaaatttgt 308  Q
    ||||||||||||||||||||||  |||||| |||| || |||||||||||         |||||||||| | |||||| ||||||| | ||| |||||||    
T  40864416 actatataaacactactaatgt--gtgatccatccgatctgggacttccatttttttttcaattcacactacactagttctacccattgtgggaatttgt 40864319  T
Q  309 gtttagttttttaactcaatttccacatttgttccaa 345  Q
    |||||||   || ||||||||||||||| ||||||||    
T  40864318 gtttagtcaatt-actcaatttccacatatgttccaa 40864283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 345
Target Start/End: Complemental strand, 10499143 - 10499013
Alignment:
Q  213 tatataaacactactaatgtatgtgatctatccaatatgggacttccannnnnnncaattcacacaatactagtactacccaatatggaaatttgtgttt 312  Q
    |||||||||| ||||||||| |||  || |||||||  ||||||||||       |||||||||||| |||||| |||||  |  | ||||||| |||||    
T  10499143 tatataaacaatactaatgtgtgt--tccatccaattcgggacttccacttttttcaattcacacaacactagttctaccttacgttgaaatttatgttt 10499046  T
Q  313 agttttttaactcaatttccacatttgttccaa 345  Q
    ||| |||||| ||||||||||||  ||||||||    
T  10499045 agtcttttaattcaatttccacacatgttccaa 10499013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 345
Target Start/End: Complemental strand, 10504172 - 10504042
Alignment:
Q  213 tatataaacactactaatgtatgtgatctatccaatatgggacttccannnnnnncaattcacacaatactagtactacccaatatggaaatttgtgttt 312  Q
    |||||||||| ||||||||| |||  || |||||||  ||||||||||       |||||||||||| |||||| |||||  |  | ||||||| |||||    
T  10504172 tatataaacaatactaatgtgtgt--tccatccaattcgggacttccacttttttcaattcacacaacactagttctaccttacgttgaaatttatgttt 10504075  T
Q  313 agttttttaactcaatttccacatttgttccaa 345  Q
    ||| |||||| ||||||||||||  ||||||||    
T  10504074 agtcttttaattcaatttccacacatgttccaa 10504042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 260
Target Start/End: Complemental strand, 11017101 - 11017054
Alignment:
Q  213 tatataaacactactaatgtatgtgatctatccaatatgggacttcca 260  Q
    |||||||||||||||||||| ||||||| |||| || |||||||||||    
T  11017101 tatataaacactactaatgtgtgtgatccatccgatgtgggacttcca 11017054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 347
Target Start/End: Complemental strand, 13346326 - 13346247
Alignment:
Q  268 caattcacacaatactagtactacccaatatggaaatttgtgtttagttttttaactcaatttccacatttgttccaata 347  Q
    |||||||||||| |||||| ||||| ||  || |||||| ||||| || |||||| ||||||||||||  ||||||||||    
T  13346326 caattcacacaacactagttctaccaaacgtgaaaatttatgttttgtcttttaattcaatttccacacatgttccaata 13346247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 345
Target Start/End: Complemental strand, 40997804 - 40997729
Alignment:
Q  270 attcacacaatactagtactacccaatatggaaatttgtgtttagttttttaactcaatttccacatttgttccaa 345  Q
    |||||||| | ||||||  |||||||| | | ||||||| |||||| ||||||||||||||| ||| |||||||||    
T  40997804 attcacactacactagttttacccaatgtaggaatttgtatttagtcttttaactcaatttctacacttgttccaa 40997729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 345
Target Start/End: Complemental strand, 40864038 - 40863962
Alignment:
Q  268 caattcacacaatactagtactacccaatatggaaatttgtgtttagttttttaactcaatttccacatttgttccaa 345  Q
    |||||||||| | |||||| ||||||| | ||| ||||||||||||||   || ||||||||||||||| ||||||||    
T  40864038 caattcacactacactagttctacccattgtgggaatttgtgtttagtcaatt-actcaatttccacatatgttccaa 40863962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 30259253 - 30259285
Alignment:
Q  211 actatataaacactactaatgtatgtgatctat 243  Q
    ||||| |||||||||||||||||||||||||||    
T  30259253 actatttaaacactactaatgtatgtgatctat 30259285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 211 - 345
Target Start/End: Complemental strand, 13521005 - 13520871
Alignment:
Q  211 actatataaacactactaatgtatgtgatctatccaatatgggacttccannnnnnncaattcacacaatactagtactacccaatatggaaatttgtgt 310  Q
    |||||||||||||||||||||| |||  |  |||| || ||| |||||||       |||||||||||| |||||| |||||||| |||| |||||||||    
T  13521005 actatataaacactactaatgtgtgtatttcatccgatgtggaacttccacttttttcaattcacacaacactagttctacccaacatgggaatttgtgt 13520906  T
Q  311 ttagttttttaactcaatttccacatttgttccaa 345  Q
    ||||| |||||||||||||||||||  ||||||||    
T  13520905 ttagtcttttaactcaatttccacacatgttccaa 13520871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 206 - 345
Target Start/End: Complemental strand, 3992791 - 3992655
Alignment:
Q  206 cccctactatataaacactactaatgtatgtgatctatccaatatgggacttccannnnnnncaattcacacaatactagtactacccaatatggaaatt 305  Q
    |||| ||||||||||||||||||||||  |||||| |||| || |||||||||||       |||||||||| | |||||| ||||||| | ||| ||||    
T  3992791 cccccactatataaacactactaatgt--gtgatccatccgatgtgggacttccacctttttcaattcacaccacactagttctacccattgtgggaatt 3992694  T
Q  306 tgtgtttagttttttaactcaatttccacatttgttccaa 345  Q
    ||||||||||   || ||||||||||| ||| ||||||||    
T  3992693 tgtgtttagtcaatt-actcaatttccgcatatgttccaa 3992655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 334
Target Start/End: Complemental strand, 31297488 - 31297421
Alignment:
Q  268 caattcacacaatactagtactacccaatatggaaatttgtgtttag-ttttttaactcaatttccac 334  Q
    |||||||||||| |||||| |||||||| |||  |||||||||||||  ||||| |||||||||||||    
T  31297488 caattcacacaacactagttctacccaacatgagaatttgtgtttagccttttttactcaatttccac 31297421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 345
Target Start/End: Original strand, 34561479 - 34561615
Alignment:
Q  206 cccctactatataaacactactaatgtatgtgatctatccaatatgggacttccannnnnnncaattcacacaatactagtactacccaatatggaaatt 305  Q
    |||| |||||||||| |||||||||||  |||||| |||| |  |||||||||||       |||||||||| |||||| | ||||||| ||| | ||||    
T  34561479 cccccactatataaatactactaatgt--gtgatccatccgacgtgggacttccacttttttcaattcacactatactaattctacccattataggaatt 34561576  T
Q  306 tgtgtttagttttttaactcaatttccacatttgttccaa 345  Q
    ||||||||||   || ||||||||||||||  ||||||||    
T  34561577 tgtgtttagtcaatt-actcaatttccacaaatgttccaa 34561615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 211 - 345
Target Start/End: Complemental strand, 7899970 - 7899840
Alignment:
Q  211 actatataaacactactaatgtatgtgatctatccaatatgggacttccannnnnnncaattcacacaatactagtactacccaatatggaaatttgtgt 310  Q
    ||||||||||||||||||||||  |||||| ||  | | |||||||||||       |||||||||| | |||||| ||||||| | ||| |||||||||    
T  7899970 actatataaacactactaatgt--gtgatccattga-tgtgggacttccacttttttcaattcacaccacactagttctacccattgtgggaatttgtgt 7899874  T
Q  311 ttagttttttaactcaatttccacatttgttccaa 345  Q
    |||||   || ||||||||||||||| ||||||||    
T  7899873 ttagtcaatt-actcaatttccacatatgttccaa 7899840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 281 - 345
Target Start/End: Original strand, 39320702 - 39320766
Alignment:
Q  281 actagtactacccaatatggaaatttgtgtttagttttttaactcaatttccacatttgttccaa 345  Q
    |||||| |||||||| |||  ||||||| |||| | |||||||||||||||||||  ||||||||    
T  39320702 actagttctacccaacatgcgaatttgtatttaatcttttaactcaatttccacacatgttccaa 39320766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 206 - 345
Target Start/End: Complemental strand, 10159741 - 10159603
Alignment:
Q  206 cccctactatataaacactactaatgtatgtgatctatccaatatgggacttccannnnnnncaattcacacaatactagtactacccaatatggaaatt 305  Q
    |||| ||||||||||||||||||||  ||||| || |||| || |||||||||||       |||||||||||| |||||| ||||| || |||| ||||    
T  10159741 cccccactatataaacactactaat--atgtgttccatccgatgtgggacttccacttttttcaattcacacaacactagttctacctaacatgggaatt 10159644  T
Q  306 tgtgtttagt-tttttaactcaatttccacatttgttccaa 345  Q
    |||||||||| ||||||||||||||||||||  ||||||||    
T  10159643 tgtgtttagtctttttaactcaatttccacagatgttccaa 10159603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 206 - 345
Target Start/End: Complemental strand, 6296934 - 6296798
Alignment:
Q  206 cccctactatataaacactactaatgtatgtgatctatccaatatgggacttccannnnnnncaattcacacaatactagtactacccaatatggaaatt 305  Q
    |||| ||||||||||||||||||||||  |||||| |||| || |||| ||||||       |||||||||| | |||||| ||||||| | ||| ||||    
T  6296934 cccccactatataaacactactaatgt--gtgatccatccgatgtgggtcttccacttttttcaattcacactacactagttctacccattgtgggaatt 6296837  T
Q  306 tgtgtttagttttttaactcaatttccacatttgttccaa 345  Q
    ||||||||||   || ||||||||||||||| ||||||||    
T  6296836 tgtgtttagtcaatt-actcaatttccacatatgttccaa 6296798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 268 - 345
Target Start/End: Original strand, 30659288 - 30659366
Alignment:
Q  268 caattcacacaatactagtactacccaatatggaaatttgtgtttagt-tttttaactcaatttccacatttgttccaa 345  Q
    |||||||||||| |||||| |||||||| |||| | ||| |||||||| ||||||||||||||||||||  ||||||||    
T  30659288 caattcacacaacactagttctacccaacatgggagtttttgtttagtctttttaactcaatttccacacatgttccaa 30659366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 345
Target Start/End: Original strand, 35602675 - 35602802
Alignment:
Q  213 tatataaacactactaatgtatgtgatctatccaatatgggacttccannnnnnncaattcacacaatactagtactacccaatatggaaatttgtgttt 312  Q
    |||||||||||||||||||| |||| || |||| || || ||||||||       |||||||||||| |||       ||||| |||  |||||||||||    
T  35602675 tatataaacactactaatgtgtgtgttccatccgatgtgagacttccacttttttcaattcacacaacactg------cccaacatgagaatttgtgttt 35602768  T
Q  313 agt-tttttaactcaatttccacatttgttccaa 345  Q
    ||| ||||||||||||||||||||  ||||||||    
T  35602769 agtctttttaactcaatttccacacatgttccaa 35602802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 211 - 345
Target Start/End: Original strand, 83983 - 84118
Alignment:
Q  211 actatataaacactactaatgtatgtgatctatccaatatgggacttccannnnnnncaattcacacaatactagtactacccaatatggaaatttgtgt 310  Q
    |||||||||||||||||||||| |||| || || |||| | |||||| ||       |||||||||||| |||||| |||||||| || |||||||||||    
T  83983 actatataaacactactaatgtgtgtgttccattcaatgtaggactttcactcttttcaattcacacaacactagttctacccaacatagaaatttgtgt 84082  T
Q  311 ttagt-tttttaactcaatttccacatttgttccaa 345  Q
    ||||| |||||||  |||||||||||  ||||||||    
T  84083 ttagtctttttaatccaatttccacacatgttccaa 84118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0628 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: scaffold0628
Description:

Target: scaffold0628; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 268 - 345
Target Start/End: Original strand, 5798 - 5875
Alignment:
Q  268 caattcacacaatactagtactacccaatatggaaatttgtgtttagttttttaactcaatttccacatttgttccaa 345  Q
    |||||||||||| |||||| ||||| ||||||  |||||||||||||| |||||||||||||||||||  ||||||||    
T  5798 caattcacacaacactagttctaccaaatatgagaatttgtgtttagtattttaactcaatttccacacatgttccaa 5875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0628; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 214 - 345
Target Start/End: Original strand, 7512 - 7643
Alignment:
Q  214 atataaacactactaatgtatgtgatctatccaatatgggacttccannnnnnncaattcacacaatactagtactacccaatatggaaatttgtgttta 313  Q
    ||||||||||| ||| ||| |||| || |||| || |||||||||||        |||||||||||||||||| ||||| || | |  |||||||||||     
T  7512 atataaacacttctattgtgtgtgttccatccgatgtgggacttccacttttttaaattcacacaatactagttctaccaaacaagagaatttgtgtttc 7611  T
Q  314 gttttttaactcaatttccacatttgttccaa 345  Q
     |  ||||||||||||||||||  ||||||||    
T  7612 ctactttaactcaatttccacacatgttccaa 7643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 268 - 345
Target Start/End: Original strand, 15509414 - 15509491
Alignment:
Q  268 caattcacacaatactagtactacccaatatggaaatttgtgtttagttttttaactcaatttccacatttgttccaa 345  Q
    ||||||||| ||||||||| |||| ||| |  |||||||||||||||| |||||||| ||||| ||||| ||||||||    
T  15509414 caattcacataatactagttctactcaacagagaaatttgtgtttagtcttttaacttaattttcacatatgttccaa 15509491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 269 - 330
Target Start/End: Complemental strand, 2881807 - 2881746
Alignment:
Q  269 aattcacacaatactagtactacccaatatggaaatttgtgtttagttttttaactcaattt 330  Q
    ||||||||||| |||||| ||||| ||| ||  ||||||||| |||||||||||||||||||    
T  2881807 aattcacacaacactagttctaccaaatgtgagaatttgtgtctagttttttaactcaattt 2881746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 211 - 331
Target Start/End: Complemental strand, 29157204 - 29157083
Alignment:
Q  211 actatataaacacta--ctaatgtatgtgatctatccaatatgggacttccannnnnnncaattcacacaatactagtactacccaatatggaaatttgt 308  Q
    |||||||||||||||  ||||||| | | ||| ||||||| | |||||||||       |||||||||||| |||  | ||||||||||||| |||||||    
T  29157204 actatataaacactatactaatgtgtctaatccatccaatgtaggacttccatttttttcaattcacacaa-acttattctacccaatatgggaatttgt 29157106  T
Q  309 gtttagttttttaactcaatttc 331  Q
    ||| ||| |||||||| ||||||    
T  29157105 gttcagtcttttaacttaatttc 29157083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 330
Target Start/End: Complemental strand, 2862504 - 2862443
Alignment:
Q  269 aattcacacaatactagtactacccaatatggaaatttgtgtttagttttttaactcaattt 330  Q
    ||||||||||| |||| | ||||| ||| ||  ||||||||| |||||||||||||||||||    
T  2862504 aattcacacaacactaattctaccaaatgtgagaatttgtgtctagttttttaactcaattt 2862443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 206 - 345
Target Start/End: Complemental strand, 34743 - 34607
Alignment:
Q  206 cccctactatataaacactactaatgtatgtgatctatccaatatgggacttccannnnnnncaattcacacaatactagtactacccaatatggaaatt 305  Q
    |||| ||||||||||||||| ||||||  |||||| || | || |||||||||||       |||||||||| | |||||| ||||||| | ||| ||||    
T  34743 cccccactatataaacactattaatgt--gtgatccatacgatgtgggacttccacttttttcaattcacactacactagttctacccattgtgggaatt 34646  T
Q  306 tgtgtttagttttttaactcaatttccacatttgttccaa 345  Q
    ||||||||||   || ||||||||||||||| ||||||||    
T  34645 tgtgtttagtcaatt-actcaatttccacatatgttccaa 34607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 335
Target Start/End: Original strand, 257768 - 257835
Alignment:
Q  268 caattcacacaatactagtactacccaatatggaaatttgtgtttagttttttaactcaatttccaca 335  Q
    |||||||||||| | |||| |||| ||| ||   |||||||||||||| |||||||||||||||||||    
T  257768 caattcacacaacattagttctactcaacataagaatttgtgtttagtcttttaactcaatttccaca 257835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 345
Target Start/End: Original strand, 59480 - 59615
Alignment:
Q  206 cccctactatataaacactactaatgtatgtgatctatccaatatgggacttccannnnnnncaattcacacaatactagtactacccaatatggaaatt 305  Q
    |||| |||||||||||| |||||||||  |||||| |||| || ||||| |||||       |||||||||| | |||||| ||||||| | ||| ||||    
T  59480 cccccactatataaacattactaatgt--gtgatccatccgatgtgggatttccacttttt-caattcacactacactagttctacccattgtgggaatt 59576  T
Q  306 tgtgtttagttttttaactcaatttccacatttgttccaa 345  Q
    ||||||||||   || ||||||||||||||| ||||||||    
T  59577 tgtgtttagtcaatt-actcaatttccacatatgttccaa 59615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 345
Target Start/End: Original strand, 63682 - 63817
Alignment:
Q  206 cccctactatataaacactactaatgtatgtgatctatccaatatgggacttccannnnnnncaattcacacaatactagtactacccaatatggaaatt 305  Q
    |||| |||||||||||| |||||||||  |||||| |||| || ||||| |||||       |||||||||| | |||||| ||||||| | ||| ||||    
T  63682 cccccactatataaacattactaatgt--gtgatccatccgatgtgggatttccacttttt-caattcacactacactagttctacccattgtgggaatt 63778  T
Q  306 tgtgtttagttttttaactcaatttccacatttgttccaa 345  Q
    ||||||||||   || ||||||||||||||| ||||||||    
T  63779 tgtgtttagtcaatt-actcaatttccacatatgttccaa 63817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 335
Target Start/End: Original strand, 8630 - 8751
Alignment:
Q  213 tatataaacactactaatgtatgtgatctatccaatatgggacttccannnnnnncaattcacacaatactagtactacccaatatggaaatttgtgttt 312  Q
    |||||||||| ||||| ||| |||||| ||| |||| || ||||||||       |||||||||||| |||||| |||  | |  | |||||||||||||    
T  8630 tatataaacattacta-tgtgtgtgatttatacaatgtgagacttccacttttttcaattcacacaacactagttctattcgaggttgaaatttgtgttt 8728  T
Q  313 agttttttaactcaatttccaca 335  Q
    ||| |||||| ||||||||||||    
T  8729 agtattttaattcaatttccaca 8751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University