View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18343_high_3 (Length: 285)
Name: NF18343_high_3
Description: NF18343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18343_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 270
Target Start/End: Complemental strand, 40966071 - 40965817
Alignment:
| Q |
19 |
gttccggcaagggaaattccaccacccgcaccgccatcacctgccttcaaaaacaaccaaagtcacattcctcaacaaaattgattttattttctttcat |
118 |
Q |
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| T |
40966071 |
gttccggcaagggaaattccaccacccgcaccgccatcacctgccttcaaaaacaaccaaagtcacattcctcaacaaaattgattttattttctttcat |
40965972 |
T |
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| Q |
119 |
aa---atagcctaaatgcgaaactaatacacactaaatagtaagaaataaagaattgcgggtaacatatgtatgcaaaaatgagttttccatcaaaactt |
215 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
40965971 |
aataaatagcctaaatgcgaaactaatacacactaaatagtaagaaataaagaattgcgggtaacatatgtatgcaaaattgagttttccatcaaaactt |
40965872 |
T |
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| Q |
216 |
acatagggcacactatcctcctcttcttcgtcatagaactcgacgctatcctcat |
270 |
Q |
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| T |
40965871 |
acatagggcacactatcctcctcttcttcgtcatagaactcgacgctatcctcat |
40965817 |
T |
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