View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18343_low_5 (Length: 260)
Name: NF18343_low_5
Description: NF18343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18343_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 6 - 245
Target Start/End: Original strand, 41583506 - 41583745
Alignment:
| Q |
6 |
ggatcacagagatagatcttccaaattcattggagagagtgaaagaaactggtcttaggcttgcaagttattgcaaacgtttcaatgttccttttgagta |
105 |
Q |
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| T |
41583506 |
ggatcacagggatagatcttccaaattcattggagagagtgaaagaaactggtcttaggcttgcaagttattgcaaacgtttcaatgttccttttgagta |
41583605 |
T |
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| Q |
106 |
caatggtattgcaaaaaattgggaaagtatcaaagttgaagattttaagataaggaaaaatgagtttgttgctgtgaattgtttgtttaagtttgagaat |
205 |
Q |
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| T |
41583606 |
caatggtattgcaaaaaattgggaaagtatcaaagttgaagattttaagataaggaaaaacgagtttgttgctgtgaattgtttgtttaagtttgagaat |
41583705 |
T |
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| Q |
206 |
ctaccggatgagacagtagtttcggagaatccgaagggtg |
245 |
Q |
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| T |
41583706 |
ctactggatgagacagtagtttcggagaatccgaagggtg |
41583745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 6 - 245
Target Start/End: Original strand, 41557377 - 41557616
Alignment:
| Q |
6 |
ggatcacagagatagatcttccaaattcattggagagagtgaaagaaactggtcttaggcttgcaagttattgcaaacgtttcaatgttccttttgagta |
105 |
Q |
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| T |
41557377 |
ggatcacagggatagatcttccaaattcattggagagagtgaaagaaactggtcttaggcttgcaagttattgcaaacgtttcaatgttccttttgagta |
41557476 |
T |
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| Q |
106 |
caatggtattgcaaaaaattgggaaagtatcaaagttgaagattttaagataaggaaaaatgagtttgttgctgtgaattgtttgtttaagtttgagaat |
205 |
Q |
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| T |
41557477 |
caatggtattgcaaaaaattgggaaagtatcaaagttgaagattttaacataaggaaaaacgagtttgttgctgtgaattgtttgtttaagtttgagaat |
41557576 |
T |
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| Q |
206 |
ctaccggatgagacagtagtttcggagaatccgaagggtg |
245 |
Q |
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| T |
41557577 |
ctactggatgagacagtagtttcggagaatccgaagggtg |
41557616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 6 - 245
Target Start/End: Original strand, 41590037 - 41590276
Alignment:
| Q |
6 |
ggatcacagagatagatcttccaaattcattggagagagtgaaagaaactggtcttaggcttgcaagttattgcaaacgtttcaatgttccttttgagta |
105 |
Q |
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| T |
41590037 |
ggatcacagggatagatcttccaaattcattggagagagtgaatgaaacaggtcttaggctttcaagttattgcaaacgtttcaatgttccttttgagta |
41590136 |
T |
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| Q |
106 |
caatggtattgcaaaaaattgggaaagtatcaaagttgaagattttaagataaggaaaaatgagtttgttgctgtgaattgtttgtttaagtttgagaat |
205 |
Q |
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| T |
41590137 |
caatggtattgcaaaaaattgggaaagtatcaaagttcaggattttaagataaggaaaaatgagtttgttgcagtgacttgtgtgtttaagtttgagaat |
41590236 |
T |
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| Q |
206 |
ctaccggatgagacagtagtttcggagaatccgaagggtg |
245 |
Q |
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| T |
41590237 |
ctacctgatgagacagttgtttcggagaatccgaggggtg |
41590276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 7 - 237
Target Start/End: Original strand, 41571090 - 41571320
Alignment:
| Q |
7 |
gatcacagagatagatcttccaaattcattggagagagtgaaagaaactggtcttaggcttgcaagttattgcaaacgtttcaatgttccttttgagtac |
106 |
Q |
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| T |
41571090 |
gatcacagggatagatcttccaaatttgttggagagagtgaatggaacaggtcttaggcttgcagcttattgcgaacgtttcggtgttccttttgagttc |
41571189 |
T |
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| Q |
107 |
aatggtattgcaaaaaattgggaaagtatcaaagttgaagattttaagataaggaaaaatgagtttgttgctgtgaattgtttgtttaagtttgagaatc |
206 |
Q |
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| T |
41571190 |
aatggtattgcgaaaaattgggaaagtatcaaagttgaggattttaagataaggaaaaatgagtttgttgctgtgaattgttattttaaatttgagaatc |
41571289 |
T |
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| Q |
207 |
taccggatgagacagtagtttcggagaatcc |
237 |
Q |
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| T |
41571290 |
tacttgatgagacggttgctccggagaatcc |
41571320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 68 - 168
Target Start/End: Complemental strand, 23916537 - 23916437
Alignment:
| Q |
68 |
gcaagttattgcaaacgtttcaatgttccttttgagtacaatggtattgcaaaaaattgggaaagtatcaaagttgaagattttaagataaggaaaaatg |
167 |
Q |
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| T |
23916537 |
gcaaggtattgtgaacgttttaatgttccgtttgagttcaatgctattgcacagaaatgggaaaccatcaaagttgaggacttgaagataaagaaaaatg |
23916438 |
T |
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| Q |
168 |
a |
168 |
Q |
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| T |
23916437 |
a |
23916437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 110
Target Start/End: Original strand, 23904977 - 23905013
Alignment:
| Q |
74 |
tattgcaaacgtttcaatgttccttttgagtacaatg |
110 |
Q |
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| T |
23904977 |
tattgcaagcgtttcaatgttcctttcgagtacaatg |
23905013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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