View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18343_low_6 (Length: 223)
Name: NF18343_low_6
Description: NF18343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18343_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 154
Target Start/End: Original strand, 3895382 - 3895519
Alignment:
| Q |
17 |
gagaagacgggggaggttgctgggtcggcgacagaggctttgaagagtgctggggaaatggcgaagaagacggcccaaggagcgtgggagacagcgaagg |
116 |
Q |
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| T |
3895382 |
gagaagacgggggaggttgctgggtcggcgacagaggctttgaagagtgctggggaaatggcgaagaagacggcccaaggagcgtgggagacagcgaagg |
3895481 |
T |
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| Q |
117 |
atgcaacacaaaagatcaaggagactgttgttggaaag |
154 |
Q |
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| T |
3895482 |
atgcaacacaaaagatcaaggagactgttgttggaaag |
3895519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 3895538 - 3895574
Alignment:
| Q |
176 |
cgtggtagtggtggttctggtgtagtagtagatgatg |
212 |
Q |
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| T |
3895538 |
cgtggtagtggtggttctggtgtagtagtagatgatg |
3895574 |
T |
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