View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18344_high_1 (Length: 306)
Name: NF18344_high_1
Description: NF18344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18344_high_1 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 16 - 306
Target Start/End: Complemental strand, 2828896 - 2828606
Alignment:
| Q |
16 |
atttttacgcaaaagtggttgtttagaggatatatagcaatgcagaattcaaagaattaaacatttgtgtttagatgtattcaagagatgcataaaagtt |
115 |
Q |
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| T |
2828896 |
atttttacgcaaaagtggttgtttagaggatatatagcaatgcagaattcaaagaattaaacatttgtgtttagatgtattcaagagatgcataaaagtt |
2828797 |
T |
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| Q |
116 |
cttaataagttagtacttccaaatatccaatactttgcattacatgtaaaagcagaatccatcagaaacatgttgataattgcataagcctttggtttaa |
215 |
Q |
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| T |
2828796 |
cttaataagttagtacctccaaatatccaatactttgcattacatgtaaaagcagaatccatcagaaacatgttgataattgcataagcctttggtttaa |
2828697 |
T |
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| Q |
216 |
ccaactacgaatatgttatatttcaacaaagaaagaagagagagttggagaaagcacacaaaaacttgtctaatggttcaccctcaacttt |
306 |
Q |
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| T |
2828696 |
ccaactacgaatatgttatatttcaacaaagaaagaagagagagttggagaaagcacacaaaaacttgtctaatggttcaccctcaacttt |
2828606 |
T |
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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 56425126 - 56425076
Alignment:
| Q |
16 |
atttttacgcaaaagtggttgtttagaggatatatagcaatgcagaattca |
66 |
Q |
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| T |
56425126 |
atttttatgcaaaagtgattgtttaaaggatatatagcaatgcagagttca |
56425076 |
T |
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