View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18344_high_5 (Length: 238)
Name: NF18344_high_5
Description: NF18344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18344_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 55014219 - 55014421
Alignment:
| Q |
18 |
agagaggaattaaattaataagttgaaatcgcacaaatgtatatatttgacattgttttaatgtaaatgctgatcaatagtaaatgaattgttgttatag |
117 |
Q |
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| T |
55014219 |
agagaggaattaaattaataagttgaaatcgcacaaatgtatatatttgacattgttttaatgtaaatgctgatcaatagtaaatgaattgttgttatag |
55014318 |
T |
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| Q |
118 |
gaagtcctagatggaaatgttgaatctcttgaatcttacaagacctcggcagagagcttcctgtgcacattactacctgaaacatcaagttcacacatag |
217 |
Q |
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| T |
55014319 |
gaagtcctagatggaaatgttgaatctcttgaatcttacaagacctcggcagagagcttcctgtgcacattactacctgaaacatcaagttcacacatcg |
55014418 |
T |
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| Q |
218 |
agt |
220 |
Q |
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| T |
55014419 |
agt |
55014421 |
T |
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