View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18344_low_2 (Length: 295)
Name: NF18344_low_2
Description: NF18344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18344_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 12 - 280
Target Start/End: Original strand, 1517843 - 1518111
Alignment:
| Q |
12 |
atgaacctatttgaagtcgctcattcccaaattgtggcactaactgttaatcatcctaaactctatgtttgagattttgggatgatcagaggtgactgtc |
111 |
Q |
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| T |
1517843 |
atgaacctatttgaagtcgctcattcccaaattgtggcactaactgttaatcatcctaaactctatgtttgagattttgggatgatcagaggtgactgtc |
1517942 |
T |
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| Q |
112 |
tccatattctttcatcttttcccaactttattacaagtagtgttaccataaaatgaatagtgtgactcattctgcactattagaaactttgtattgaatt |
211 |
Q |
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| T |
1517943 |
tccatattctttcatcttttcccaactttattacaagtagtgttaccataaaatgaatagtgtgactcattctgcactattagaaactttgtattgaatt |
1518042 |
T |
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| Q |
212 |
gaatcctcaatttttaatagaggggtactttaaagaaaaatgataaatatatattggatatctaaaaca |
280 |
Q |
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| T |
1518043 |
gaatcctcaatttttaatagagggatactttaaagaaaaatgataaatatatattggatatctaaaaca |
1518111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 34 - 229
Target Start/End: Original strand, 2908773 - 2908978
Alignment:
| Q |
34 |
attcccaaattgtggcactaactgttaatcatcctaaactctatgtttgagattttgggatgatcagaggtgactgtctccatattctttcatcttttcc |
133 |
Q |
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| T |
2908773 |
attcccaaattgtggcactaagtgttaatcatcctaaactct--gttttggattttggaatgatcagtggtgattgtctccatattctttcatcttttcc |
2908870 |
T |
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| Q |
134 |
caactttattacaagtagtgttaccataaaatgaatagtgtgactcattct------------gcactattagaaactttgtattgaattgaatcctcaa |
221 |
Q |
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| T |
2908871 |
caacttgattacaagtagtgttaccacaaaatgaatagtgtgactcattctcttgcaaatgaagcactattagtaactttatattgaattgaatccttaa |
2908970 |
T |
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| Q |
222 |
tttttaat |
229 |
Q |
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| T |
2908971 |
tttttaat |
2908978 |
T |
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